Browse Element(s) Details


OsAffx.28690.1.S1_at

Description gb:NM_187335.1
DB_XREF= gi:34901755
GEN=OJ1058_B11.6
TID=OsAffx.28690.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1058_B11.6 (OJ1058_B11.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g312009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31190OsAffx.28689.1.S1_at11/117+18451961..18460762expressed protein
LOC_Os07g31200OsAffx.28690.1.S1_at9/117+18473342..18474200hypothetical protein
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28690.1.S1_at--338--1271Chr07:18473404..18473810 (25 bp)
AGAGAAGGCCGCGAAACATGTTTTC
LOC_Os07g31200
OsAffx.28690.1.S1_at--1086--4931Chr07:18473817..18473841 (25 bp)
GCATTCCGGCGAAATCGCTTTTTGA
LOC_Os07g31200
OsAffx.28690.1.S1_at--991--10571Chr07:18473860..18473884 (25 bp)
TTCTCCCTGGAGACGGCAAGGTCAT
LOC_Os07g31200
OsAffx.28690.1.S1_at--181--2851Chr07:18473899..18473923 (25 bp)
AAGTCAAAGCCCTGGATCTTCTATC
LOC_Os07g31200
OsAffx.28690.1.S1_at--482--8571Chr07:18473911..18473935 (25 bp)
TGGATCTTCTATCGGTCGGCACTGT
LOC_Os07g31200
OsAffx.28690.1.S1_at--304--7191Chr07:18473925..18473949 (25 bp)
GTCGGCACTGTCACCACGAGGAGAG
LOC_Os07g31200
OsAffx.28690.1.S1_at--181--4591Chr07:18474045..18474069 (25 bp)
GCGCACCGTGGGAGTCGAGCTCAAT
LOC_Os07g31200
OsAffx.28690.1.S1_at--665--1151Chr07:18474057..18474081 (25 bp)
AGTCGAGCTCAATGGCGGTGCTTGA
LOC_Os07g31200
OsAffx.28690.1.S1_at--1076--1951Chr07:18474144..18474168 (25 bp)
ACTGCAGCTGTGCACCGAAACCGGT
LOC_Os07g31200
OsAffx.28690.1.S1_at--284--9291Chr07:18474254..18474278 (25 bp)
TCCGTGGCTGTCAACGAATGTGGCT
NONE
OsAffx.28690.1.S1_at--310--5291Chr07:18474269..18474293 (25 bp)
GAATGTGGCTGGACACGGTCACAGA
NONE
Target Sequence 
AGAGAAGGCCGCGAAACATGTTTTCGGAATAGCATTCCGGCGAAATCGCTTTTTGAAAGTGGCCAAATGTCCATTTCTCC
CTGGAGACGGCAAGGTCATCCATTGTGTAGATGAAGTCAAAGCCCTGGATCTTCTATCGGTCGGCACTGTCACCACGAGG
AGAGCGGGCGGGGCCATGGGGGCGTCCAAGCAGCGCACCGCCACTGCTGCCCTTGCGTTCACGCGAATCACCAGCACCTC
CTACACCCGATGCAGCGGCGCGCACCGTGGGAGTCGAGCTCAATGGCGGTGCTTGAGGTGCCGAGGGGTGGCCCTGGTTC
CTCCTCCTGATGCGACGCGCAACGTGGGGGTGGCTGCGACTGCAGCTGTGCACCGAAACCGGTCCTCTCCACCGTCGGCT
CGGCTGCCTCCCTAAGCAGTCCGTCGCCACGTTTTTCCTGATGTCCGCCATCGCCGGAGCTCCATCCCTCCGTGGCTGTC
AACGAATGTGGCTGGACACGGTCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis