Browse Element(s) Details


OsAffx.23391.1.S1_at

Description tigr:9629.m02466
TID=OsAffx.23391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2542011/11
LOC_Os07g312302/11hypothetical protein
LOC_Os11g041201/11hypothetical protein
LOC_Os11g267301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25386Os.27603.1.S1_at11/111+14322615..14339725glutathione-conjugate transporter, putative, expressed
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA
LOC_Os01g25430OsAffx.23392.1.S1_at11/111+14368177..14369407hypothetical protein
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23391.1.S1_at--817--7611Chr01:14360149..14360173 (25 bp)
GGGAACGGTCCTGCACCAGGAGCTA
LOC_Os01g25420
OsAffx.23391.1.S1_at--245--7251Chr01:14360142..14360166 (25 bp)
GTCCTGCACCAGGAGCTAGAGGGAA
LOC_Os01g25420
OsAffx.23391.1.S1_at--788--3811Chr01:14360066..14360090 (25 bp)
CTCCACTGCACTGTTTTCTAGGTAT
LOC_Os01g25420
OsAffx.23391.1.S1_at--976--5091Chr01:14360059..14360083 (25 bp)
GCACTGTTTTCTAGGTATATGGTTT
LOC_Os01g25420
OsAffx.23391.1.S1_at--1059--7851Chr01:14360046..14360070 (25 bp)
GGTATATGGTTTTATCTCTAATTGA
LOC_Os01g25420
OsAffx.23391.1.S1_at--494--51Chr01:14360026..14360050 (25 bp)
ATTGATGTTCTTCCTGTTATTTACA
LOC_Os01g25420
OsAffx.23391.1.S1_at--1134--6711Chr01:14360020..14360044 (25 bp)
GTTCTTCCTGTTATTTACATATTGA
LOC_Os01g25420
OsAffx.23391.1.S1_at--611--3571Chr01:14360003..14360027 (25 bp)
CATATTGATTATGCTATCCTTCGGA
LOC_Os01g25420
OsAffx.23391.1.S1_at--355--9071Chr01:14359992..14360016 (25 bp)
TGCTATCCTTCGGATTACAATCCTA
LOC_Os01g25420
OsAffx.23391.1.S1_at--652--7935Chr03:17656707..17656727 (21 bp)
GGATTACAATCCTATGTGAATGTTG
NONE
OsAffx.23391.1.S1_at--602--2412Chr07:18487045..18487113 (25 bp)
AAAAAGCATGCCCATATTTCGTTTA
LOC_Os07g31230
Target Sequence 
GGGAACGGTCCTGCACCAGGAGCTAGAGGGAACGGCGGCGCTCCAGGAGACAACACCAACGGAGGCAATACAAATACCTC
AACCTCCACTGCACTGTTTTCTAGGTATATGGTTTTATCTCTAATTGATGTTCTTCCTGTTATTTACATATTGATTATGC
TATCCTTCGGATTACAATCCTATGTGAATGTTGATGATGCTTATGCTTATGTTATAAAAAGCATGCCCATATTTCGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis