Browse Element(s) Details


Os.34588.2.S1_at

Description gb:NM_193981.1
DB_XREF= gi:34915045
GEN=B1157F09.19
TID=Os.34588.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34588 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative thiamin pyrophosphokinase (B1157F09.19), mRNA.
PROD=putative thiamin pyrophosphokinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2544010/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os03g431301/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA
LOC_Os01g25430OsAffx.23392.1.S1_at11/111+14368177..14369407hypothetical protein
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34588.2.S1_at--916--8951Chr01:14378714..14378738 (25 bp)
TGACATGCTCTGTGATCTAAATGCT
LOC_Os01g25440
Os.34588.2.S1_at--934--9091Chr01:14378709..14378733 (25 bp)
TGCTCTGTGATCTAAATGCTCAACT
LOC_Os01g25440
Os.34588.2.S1_at--1030--6391Chr01:14378701..14378725 (25 bp)
GATCTAAATGCTCAACTTGTTCCTA
LOC_Os01g25440
Os.34588.2.S1_at--592--8991Chr01:14378693..14378717 (25 bp)
TGCTCAACTTGTTCCTAAAACAGTT
LOC_Os01g25440
Os.34588.2.S1_at--1054--2391Chr01:14378666..14378690 (25 bp)
AAAAATTAACAGCACCTATGGGCAT
LOC_Os01g25440
Os.34588.2.S1_at--875--131Chr01:14378662..14378686 (25 bp)
ATTAACAGCACCTATGGGCATATAC
LOC_Os01g25440
Os.34588.2.S1_at--1111--5071Chr01:14378655..14378679 (25 bp)
GCACCTATGGGCATATACAGGCCAA
LOC_Os01g25440
Os.34588.2.S1_at--1036--10171NONE
TATACAGGCCAAGATCCCATTGCAA
NONE
Os.34588.2.S1_at--283--2817Chr12:17174709..17174728 (20 bp)
AAGATCCCATTGCAACGCACAGGCA
NONE
Os.34588.2.S1_at--918--3251Chr01:14377614..14377638 (25 bp)
CAACGCACAGGCATGTCCATAGTGT
LOC_Os01g25440
Os.34588.2.S1_at--311--3491Chr01:14377607..14377631 (25 bp)
CAGGCATGTCCATAGTGTGTTGGAA
LOC_Os01g25440
Target Sequence 
TGACATGCTCTGTGATCTAAATGCTCAACTTGTTCCTAAAACAGTTACAAAAATTAACAGCACCTATGGGCATATACAGG
CCAAGATCCCATTGCAACGCACAGGCATGTCCATAGTGTGTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34588.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis