Browse Element(s) Details


OsAffx.23392.1.S1_at

Description tigr:9629.m02467
TID=OsAffx.23392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2543011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA
LOC_Os01g25430OsAffx.23392.1.S1_at11/111+14368177..14369407hypothetical protein
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23392.1.S1_at--1093--951Chr01:14368789..14368813 (25 bp)
AGGACCGCACCAACGTGCATGGAAC
LOC_Os01g25430
OsAffx.23392.1.S1_at--296--5011Chr01:14368773..14368797 (25 bp)
GCATGGAACCTCCAATGTGATGCAT
LOC_Os01g25430
OsAffx.23392.1.S1_at--505--8951Chr01:14368736..14368760 (25 bp)
TGACAACTAAGATGTCGTCGTCACC
LOC_Os01g25430
OsAffx.23392.1.S1_at--94--9411Chr01:14368719..14368743 (25 bp)
TCGTCACCATTCTTATCATCCGAAA
LOC_Os01g25430
OsAffx.23392.1.S1_at--687--3291Chr01:14368703..14368727 (25 bp)
CATCCGAAACTAGATTTTCACCCAA
LOC_Os01g25430
OsAffx.23392.1.S1_at--510--7591Chr01:14368645..14368669 (25 bp)
GGGCATCAATGACATCGCCTTTAGA
LOC_Os01g25430
OsAffx.23392.1.S1_at--358--8951Chr01:14368236..14368660 (25 bp)
TGACATCGCCTTTAGAAAGCCGCCT
LOC_Os01g25430
OsAffx.23392.1.S1_at--635--8451Chr01:14368289..14368313 (25 bp)
TGGCCAGCAGCTACACCTCATCAGT
LOC_Os01g25430
OsAffx.23392.1.S1_at--61--9271Chr01:14368263..14368287 (25 bp)
TCCTCTGCTCGGAATCAATCTGATT
LOC_Os01g25430
OsAffx.23392.1.S1_at--611--9471Chr01:14368245..14368269 (25 bp)
TCTGATTCCAGCAAAGACAACCCCG
LOC_Os01g25430
OsAffx.23392.1.S1_at--31--9151Chr01:14368207..14368231 (25 bp)
TGCGTCCCCGTGCAACGGTGCACAA
LOC_Os01g25430
Target Sequence 
AGGACCGCACCAACGTGCATGGAACCTCCAATGTGATGCATGCAAGAAGGTCATGACAACTAAGATGTCGTCGTCACCAT
TCTTATCATCCGAAACTAGATTTTCACCCAAAAAATCCACCTTGAAGCAACAAGGTGAGGGAGGGGGCATCAATGACATC
GCCTTTAGAAAGCCGCCTCACCAGCTCATGGCCAGCAGCTACACCTCATCAGTCTCCTCTGCTCGGAATCAATCTGATTC
CAGCAAAGACAACCCCGCCACCGCCTTCCTTGCGTCCCCGTGCAACGGTGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis