Browse Element(s) Details


Os.34588.1.S1_at

Description gb:AK070843.1
DB_XREF= gi:32980866
TID=Os.34588.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1157F09.20 (B1157F09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070N03, full insert sequence.
FL= gb:AK070843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2544011/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA
LOC_Os01g25430OsAffx.23392.1.S1_at11/111+14368177..14369407hypothetical protein
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34588.1.S1_at--1034--6751Chr01:14375053..14375077 (25 bp)
GTTCAAAGGCAGTTCTGCTTCTGCA
LOC_Os01g25440
Os.34588.1.S1_at--605--8431Chr01:14375026..14375050 (25 bp)
GGCCAAATAATTTTCCCTGCTTCAT
LOC_Os01g25440
Os.34588.1.S1_at--16--8091Chr01:14374956..14374980 (25 bp)
GGAGCTGCCAGTGGATTGCATGAAC
LOC_Os01g25440
Os.34588.1.S1_at--357--10731Chr01:14374941..14374965 (25 bp)
TTGCATGAACACCACAGGCAGATGT
LOC_Os01g25440
Os.34588.1.S1_at--386--271Chr01:14374870..14374894 (25 bp)
ATATGATCCCTGCAATACCTCTCTT
LOC_Os01g25440
Os.34588.1.S1_at--366--8251Chr01:14374839..14374863 (25 bp)
GGCACTGCGTACTCTGCACATATAA
LOC_Os01g25440
Os.34588.1.S1_at--469--6571Chr01:14374799..14374823 (25 bp)
GATTCTTGCATTTATGCCCGCCTAA
LOC_Os01g25440
Os.34588.1.S1_at--1055--2251Chr01:14374761..14374785 (25 bp)
AAATATGTTTGCCTTCTCTTCTAGC
LOC_Os01g25440
Os.34588.1.S1_at--940--10391Chr01:14374700..14374724 (25 bp)
TTTTGCATTGTCTCGTCTATCCATA
LOC_Os01g25440
Os.34588.1.S1_at--555--1531Chr01:14374608..14374632 (25 bp)
AGCATGCAGAATAGTCCACTCCGTT
LOC_Os01g25440
Os.34588.1.S1_at--549--6731Chr01:14374586..14374610 (25 bp)
GTTCATTCCAGCTACCGGTGGCGGA
LOC_Os01g25440
Target Sequence 
GTTCAAAGGCAGTTCTGCTTCTGCATCGGCCAAATAATTTTCCCTGCTTCATGATAAAGCAATTCATGATGCTCATGAGG
TTAGAAACTTTTAAGGAGGAGCTGCCAGTGGATTGCATGAACACCACAGGCAGATGTATGATGTAATTCCTTTATTGGTT
TGTTTCTGTGGGATCGGATGAGCATATGATCCCTGCAATACCTCTCTTCCGATTGGCACTGCGTACTCTGCACATATAAC
TTGCTGAAGAGAAGGATTCTTGCATTTATGCCCGCCTAAGACGGGGGAAAAGAAATATGTTTGCCTTCTCTTCTAGCCGG
ATTTTTTATTTCTTGTTTTCAGACATTAGTATGTTTTGCATTGTCTCGTCTATCCATATTACAGATTACATCAAGTGTGT
AAAAAAGACGGATCAGAGATGAACTGATTTTTGTCAGGTCTGGACAGCATGCAGAATAGTCCACTCCGTTCATTCCAGCT
ACCGGTGGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis