Browse Element(s) Details


Os.16833.1.S1_x_at

Description gb:BI804677
DB_XREF= gi:16577381
DB_XREF=H143C09
CLONE=H143C09
TID=Os.16833.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16833 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g254504/11AIG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25440Os.34588.1.S1_at11/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.34588.2.S1_at10/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25440Os.23761.1.S1_at8/111+14374480..14381079Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os01g25450OsAffx.27508.85.S1_s_at10/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25450Os.16833.1.S1_x_at4/111+14397151..14413734AIG1 family protein, expressed
LOC_Os01g25460Os.35957.1.S1_at11/111+14420371..14422169leucine-rich repeat family protein, putative, expressed
LOC_Os01g25470OsAffx.2085.1.S1_at11/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25470Os.37971.1.A1_at1/111+14425198..14427377flavin-containing monooxygenase family protein, putative
LOC_Os01g25484Os.142.2.A1_a_at11/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25484Os.12293.4.S1_x_at6/111+14429394..14435943Nitrite/Sulfite reductase ferredoxin-like half domain containing protein, expressed
LOC_Os01g25500Os.53710.1.S1_at11/111+14436171..14437040expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0004888molecular_functiontransmembrane receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16833.1.S1_x_at--782--1111NONE
AGTGACCATGGAGGCTGAGAGACAA
NONE
Os.16833.1.S1_x_at--279--5851NONE
GACCATGGAGGCTGAGAGACAATGA
NONE
Os.16833.1.S1_x_at--24--5991NONE
GAGACAATGAGCTTGAACGTTGCGA
NONE
Os.16833.1.S1_x_at--533--5451NONE
GAACGTTGCGAATTCAGTTATGGTG
NONE
Os.16833.1.S1_x_at--147--2991NONE
AATGATGGAATGAAACTTGACCAAG
NONE
Os.16833.1.S1_x_at--660--5531NONE
GAAACTTGACCAAGAAACTATTTGG
NONE
Os.16833.1.S1_x_at--517--3131Chr01:14410909..14410933 (25 bp)
AATTTAGTGACAATGGAGGCTGAGA
LOC_Os01g25450
Os.16833.1.S1_x_at--422--5911Chr01:14410939..14410962 (24 bp)
GAGCTTGAAGTTGCGAATTCAGTTA
LOC_Os01g25450
Os.16833.1.S1_x_at--826--5211NONE
GAATTCAGTTATGGTGAGTGATCCT
NONE
Os.16833.1.S1_x_at--538--6111Chr01:14410968..14410992 (25 bp)
GAGTGATCCTGAGTTAAGGTCGATT
LOC_Os01g25450
Os.16833.1.S1_x_at--1030--7791Chr01:14410985..14411008 (24 bp)
GGTCGATTGAATCTTTTCAATGTGA
LOC_Os01g25450
Target Sequence 
AGTGACCATGGAGGCTGAGAGACAATGAGCTTGAACGTTGCGAATTCAGTTATGGTGAGTGATCCTGAGTTAAGGTCGAT
TGAATCTTTTCAATGTGAAGAGAATGATGGAATGAAACTTGACCAAGAAACTATTTGGAAAAAAAAAAACAAAAAACTTT
TGAGCACACAAACAAAATTGGAGGAGATATACAATTGTTAGTGAAAGATAAGAATTTAGTGACAATGGAGGCTGAGAGAA
ATGAGCTTGAAGTTGCGAATTCAGTTATGGTGAGTGATCCTGAGTTAAGGTCGATTGAATCTTTTCAATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16833.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis