Browse Element(s) Details


Os.37971.1.A1_at

Description gb:AK068129.1
DB_XREF= gi:32978147
TID=Os.37971.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A08, full insert sequence.
FL= gb:AK068129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g302802/11wall-associated kinase 3, putative
LOC_Os01g254701/11flavin-containing monooxygenase family protein, putative
LOC_Os06g365101/11hypothetical protein
LOC_Os09g042001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g530501/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009826biological_processunidimensional cell growth
GO:0009851biological_processauxin biosynthesis
GO:0048527biological_processlateral root development
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004497molecular_functionmonooxygenase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37971.1.A1_at--695--6631Chr04:31477232..31477256 (25 bp)
GTTGTTCTCGGCTGTAGTGTACCCA
NONE
Os.37971.1.A1_at--487--10051Chr04:31477246..31477270 (25 bp)
TAGTGTACCCAGGTTTCCTTTGCGT
NONE
Os.37971.1.A1_at--780--10291Chr04:31477259..31477283 (25 bp)
TTTCCTTTGCGTTTGCGTTCTTGGG
NONE
Os.37971.1.A1_at--513--4031Chr04:31477274..31477298 (25 bp)
CGTTCTTGGGAGTGTTTTGGCTGAC
NONE
Os.37971.1.A1_at--564--10211Chr04:31477289..31477313 (25 bp)
TTTGGCTGACTGTGGAAAATTCTAA
NONE
Os.37971.1.A1_at--827--6811Chr04:31477317..31477341 (25 bp)
GTTTTATTGTGATGTTTTCTGATCT
NONE
Os.37971.1.A1_at--233--3873Chr05:7387387..7387411 (25 bp)
CTGATCTATTATATCGACCCTCTCA
NONE
Os.37971.1.A1_at--271--9552Chr05:7389131..7389236 (24 bp)
TCTATTATATCGACCCTCTCATGGG
NONE
Os.37971.1.A1_at--370--100929Chr12:26011549..26011572 (24 bp)
TAGGACTCTATCTTATCTCTAGGAG
NONE
Os.37971.1.A1_at--409--4557Chr12:13179448..13179505 (25 bp)
ATCTCTAGGATATATCTTATCTCTA
NONE
Os.37971.1.A1_at--1114--10671NONE
TTCCAGATTGCCATTGATGTGATTC
NONE
Target Sequence 
GTTGTTCTCGGCTGTAGTGTACCCAGGTTTCCTTTGCGTTTGCGTTCTTGGGAGTGTTTTGGCTGACTGTGGAAAATTCT
AATTTGTTTTATTGTGATGTTTTCTGATCTATTATATCGACCCTCTCATGGGGTATATATAGGAGTACATAGGGGATAGA
GACTTGGAGTATAATACAAGTAAGAGTAGATTTATCTCTAGGATTCTATCTNTAGGACTCTATCTTATCTCTAGGAGTCN
ATCTCTAGGATATATCTTATCTCTATATTTGTATTTGACTCTTATCTCTAACTAACANATTATANTTCTAANANANCTTT
CCAGATTGCCATTGATGTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37971.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis