Browse Element(s) Details


OsAffx.14042.1.S1_at

Description tigr:9632.m02870
TID=OsAffx.14042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3028011/11wall-associated kinase 3, putative
LOC_Os09g042001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14042.1.S1_at--438--4491Chr04:17895974..17895998 (25 bp)
GCCGGGCGCCAATGCTACTGGATTG
LOC_Os04g30280
OsAffx.14042.1.S1_at--679--8651Chr04:17895951..17895975 (25 bp)
TGGGCTATCCGAACTGTGAACAACT
LOC_Os04g30280
OsAffx.14042.1.S1_at--379--10171Chr04:17895867..17895891 (25 bp)
TTCAATTCCTCCAATGGACCAGGCT
LOC_Os04g30280
OsAffx.14042.1.S1_at--116--5851Chr04:17895851..17895875 (25 bp)
GACCAGGCTATATATGCAATTGCAC
LOC_Os04g30280
OsAffx.14042.1.S1_at--282--5151Chr04:17895836..17895860 (25 bp)
GCAATTGCACAAACGGGTACCAAGG
LOC_Os04g30280
OsAffx.14042.1.S1_at--726--8391Chr04:17891815..17891839 (25 bp)
GGCGCCACAACATTTTTTCGACTCA
LOC_Os04g30280
OsAffx.14042.1.S1_at--211--10291Chr04:17891800..17891824 (25 bp)
TTTCGACTCACCATCTGACTTTGAT
LOC_Os04g30280
OsAffx.14042.1.S1_at--907--1635Chr11:432479..432702 (25 bp)
AGCGTCTTGCAGATTAATCTATCAG
NONE
OsAffx.14042.1.S1_at--273--6199Chr11:432301..432527 (25 bp)
GAGGACGCGAGGTGTCCATCTATGT
NONE
OsAffx.14042.1.S1_at--683--4331Chr04:17890805..17890829 (25 bp)
CCATCTATGTGGACGAGTCGGCAGC
LOC_Os04g30280
OsAffx.14042.1.S1_at--588--5074Chr09:2208790..2208814 (25 bp)
GCAGCGGCAAGTTGATGAAGACCAC
LOC_Os09g04200
Target Sequence 
GCCGGGCGCCAATGCTACTGGATTGGGCTATCCGAACTGTGAACAACTGTGACGAAGCACAAAAAAATCTCACGTTATAC
GCGTGTAAAAGTGACAAGAGCGAGTGCTTCAATTCCTCCAATGGACCAGGCTATATATGCAATTGCACAAACGGGTACCA
AGGAAATCCTTATCGACAGGATGGTTGCCAAGTGGAAACAGGGTTAGACGGAAGAGGGTCTAACAGGGTAAAAACAGGGT
TAGATGGAAGACGGAACAGGGCGGCGCCACAACATTTTTTCGACTCACCATCTGACTTTGATGATGATTCACATAAAAAC
ATATGCGGAGAAACAATCAAGGAGTACATAGGGGATAGAGACTTGGAGTACAATACAAATGACGTGATCGATGCCGTCGT
TGGTGACGCGGTCGTTGCCGTCGTAGAGGATGCGGTCGATGTCGTCGATGAAGCGTCTTGCAGATTAATCTATCAGAGGA
CGCGAGGTGTCCATCTATGTGGACGAGTCGGCAGCGGCAAGTTGATGAAGACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis