Browse Element(s) Details


OsAffx.3951.1.S1_at

Description tigr:9632.m02876
TID=OsAffx.3951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3034011/11wall-associated kinase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative
LOC_Os04g30350Os.46012.3.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.46012.2.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.27088.1.A1_x_at2/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30360OsAffx.26252.1.S1_at11/114+17928616..17929913wall-associated kinase 3, putative
LOC_Os04g30370NANA4+17934039..17938750Protein kinase domain containing protein
LOC_Os04g30380Os.27639.1.S1_x_at9/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30380OsAffx.8980.1.S1_at4/114+17939380..17944436transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3951.1.S1_at--630--3251Chr04:17918821..17918845 (25 bp)
CAACGACGGTGACTGCTTCGGGATA
LOC_Os04g30340
OsAffx.3951.1.S1_at--279--7911Chr04:17918796..17918820 (25 bp)
GGTTGTTGCCAAATGAATATCCCCA
LOC_Os04g30340
OsAffx.3951.1.S1_at--1157--9871Chr04:17918760..17918784 (25 bp)
TACTACCAGATTTCGTTTGACCCAC
LOC_Os04g30340
OsAffx.3951.1.S1_at--815--3351Chr04:17918738..17918762 (25 bp)
CACGCTTCAACACAACGGAGATCTA
LOC_Os04g30340
OsAffx.3951.1.S1_at--568--8051Chr04:17918722..17918746 (25 bp)
GGAGATCTACAACTTTAGTCCTTGT
LOC_Os04g30340
OsAffx.3951.1.S1_at--1135--1131Chr04:17918706..17918730 (25 bp)
AGTCCTTGTAGCTATGCAGCACTCG
LOC_Os04g30340
OsAffx.3951.1.S1_at--445--5111Chr04:17918688..17918712 (25 bp)
GCACTCGTGGAGTCATCTAGATTCA
LOC_Os04g30340
OsAffx.3951.1.S1_at--831--1431Chr04:17918654..17918678 (25 bp)
AGAACTACTCTACATCTTCAGCGTT
LOC_Os04g30340
OsAffx.3951.1.S1_at--711--9291Chr04:17918605..17918629 (25 bp)
TCCGCTACGCGTGGATTGGGCCATT
LOC_Os04g30340
OsAffx.3951.1.S1_at--759--8271Chr04:17918555..17918579 (25 bp)
GGCATCAGGCCAATTACAGCTGCAT
LOC_Os04g30340
OsAffx.3951.1.S1_at--211--1311Chr04:17918438..17918461 (24 bp)
AGATGATCCCGACAGCTGCCAAGGA
LOC_Os04g30340
Target Sequence 
CAACGACGGTGACTGCTTCGGGATAGGTTGTTGCCAAATGAATATCCCCAAGGGGCTCCAGTACTACCAGATTTCGTTTG
ACCCACGCTTCAACACAACGGAGATCTACAACTTTAGTCCTTGTAGCTATGCAGCACTCGTGGAGTCATCTAGATTCAAA
TTCTCCAAGAACTACTCTACATCTTCAGCGTTCAATGATTATTATGGCGGGCAGGCTCCGCTACGCGTGGATTGGGCCAT
TGGGAACAAGACATGTGAGGAAGCACGGCATCAGGCCAATTACAGCTGCATCAGCACATACAGCGATTGCTTCAACTCGC
TCAACGGACCAGGCTACATATGCAACTGCTCCAAAGGATTCTACGGAAATCCTTACCTGAAGTCAGATGATCCCGACAGC
TGCCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis