Browse Element(s) Details


Os.26888.1.A1_s_at

Description gb:CB626658
DB_XREF= gi:29621647
DB_XREF=OSIIEb01A24.r
CLONE=OSIIEb01A24
TID=Os.26888.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26888 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173544.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3033011/11Protein kinase domain containing protein, expressed
LOC_Os04g302603/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative
LOC_Os04g30350Os.46012.3.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.46012.2.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.27088.1.A1_x_at2/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30360OsAffx.26252.1.S1_at11/114+17928616..17929913wall-associated kinase 3, putative
LOC_Os04g30370NANA4+17934039..17938750Protein kinase domain containing protein
LOC_Os04g30380Os.27639.1.S1_x_at9/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30380OsAffx.8980.1.S1_at4/114+17939380..17944436transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26888.1.A1_s_at--657--10012Chr04:17911956..17911980 (25 bp)
TAGCAATGACTAGTGAGAGCAGACC
LOC_Os04g30330
Os.26888.1.A1_s_at--218--32Chr04:17911918..17911942 (25 bp)
ATTGCAGAGGAATTGCGACGAATAG
LOC_Os04g30330
Os.26888.1.A1_s_at--555--6192Chr04:17911912..17911936 (25 bp)
GAGGAATTGCGACGAATAGAAAAAC
LOC_Os04g30330
Os.26888.1.A1_s_at--978--7671Chr04:17911869..17911893 (25 bp)
GGGTACTTACAAGTATTAGTTCATT
LOC_Os04g30330
Os.26888.1.A1_s_at--522--2051Chr04:17911865..17911889 (25 bp)
ACTTACAAGTATTAGTTCATTGTCA
LOC_Os04g30330
Os.26888.1.A1_s_at--86--831Chr04:17911717..17911741 (25 bp)
ATGGTTGTCGTTTGAATGTGAGCGC
LOC_Os04g30330
Os.26888.1.A1_s_at--655--6631Chr04:17911714..17911738 (25 bp)
GTTGTCGTTTGAATGTGAGCGCTTC
LOC_Os04g30330
Os.26888.1.A1_s_at--246--7211Chr04:17911711..17911735 (25 bp)
GTCGTTTGAATGTGAGCGCTTCTGT
LOC_Os04g30330
Os.26888.1.A1_s_at--570--6851Chr04:17911708..17911732 (25 bp)
GTTTGAATGTGAGCGCTTCTGTTAT
LOC_Os04g30330
Os.26888.1.A1_s_at--1007--5271Chr04:17911704..17911728 (25 bp)
GAATGTGAGCGCTTCTGTTATATGC
LOC_Os04g30330
Os.26888.1.A1_s_at--917--9591Chr04:17911665..17911689 (25 bp)
TCATTTGTAACTCTGTTCTAGATAT
LOC_Os04g30330
Target Sequence 
TAGCAATGACTAGTGAGAGCAGACCNNCCATGAGCATGATTGCAGAGGAATTGCGACGAATAGAAAAACAAGTACANCAA
CAGCGTGGGGTACTTACAAGTATTAGTTCATTGTCACTGTCAGTAAGTTCAGCTGCAGACACATCAGAGCATTTCNCAGG
TGAAACCAATGGNTACGACANCCTTAGGAGGGTAGCCGCAATGAGCATAGAATTTGCTAGATGATCNCNCAAGTACTAAA
TGGTTGTCGTTTGAATGTGAGCGCTTCTGTTATATGCCAATANNATATTTTTCATTTGTAACTCTGTTCTAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26888.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis