Browse Element(s) Details


OsAffx.26250.1.S1_at

Description tigr:9632.m02871
TID=OsAffx.26250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed
LOC_Os04g30330Os.26888.1.A1_s_at11/114+17911549..17914637Protein kinase domain containing protein, expressed
LOC_Os04g30340OsAffx.3951.1.S1_at11/114+17918005..17919318wall-associated kinase 2, putative
LOC_Os04g30350Os.46012.3.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.46012.2.S1_x_at3/114+17924091..17924573retrotransposon protein, putative, unclassified
LOC_Os04g30350Os.27088.1.A1_x_at2/114+17924091..17924573retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26250.1.S1_at--844--451Chr04:17899279..17899303 (25 bp)
ATCTCTCTCGGGTCGGAGGCTGTGA
LOC_Os04g30290
OsAffx.26250.1.S1_at--943--4211Chr04:17899311..17899335 (25 bp)
CCGCGCACTAGCAGAGGCCGAGAAT
LOC_Os04g30290
OsAffx.26250.1.S1_at--1125--8411Chr04:17899377..17899401 (25 bp)
GGCCTGTCAAGCTCACTGGTCGTGC
LOC_Os04g30290
OsAffx.26250.1.S1_at--320--831Chr04:17899457..17899481 (25 bp)
ATGGAAAGCGGCAGCCCCAATCGGA
LOC_Os04g30290
OsAffx.26250.1.S1_at--631--3031Chr04:17899475..17899811 (25 bp)
AATCGGACTTCCACGGCAGGATCGC
LOC_Os04g30290
OsAffx.26250.1.S1_at--1084--4772Chr04:17899815..17899839 (25 bp)
GCTGCCCATCCGGAAGAGACAGTTG
LOC_Os04g30290
OsAffx.26250.1.S1_at--916--2131Chr04:17899833..17899857 (25 bp)
ACAGTTGGCGACTTCGATGGAGAGC
LOC_Os04g30290
OsAffx.26250.1.S1_at--1132--551Chr04:17899883..17899991 (25 bp)
ATCCTGTCCTGGCTGCAGTTGACGA
LOC_Os04g30290
OsAffx.26250.1.S1_at--645--1751Chr04:17900078..17900102 (25 bp)
ACCTCTGCCATGCAAGGGTTCGATG
LOC_Os04g30290
OsAffx.26250.1.S1_at--327--9391Chr04:17900097..17900121 (25 bp)
TCGATGGCTCGATGAGCACGGCGAT
LOC_Os04g30290
OsAffx.26250.1.S1_at--807--6171Chr04:17900133..17900157 (25 bp)
GAGGAGGGCGCGTCTCAACACTGCA
LOC_Os04g30290
Target Sequence 
ATCTCTCTCGGGTCGGAGGCTGTGAAGGAGCCCCGCGCACTAGCAGAGGCCGAGAATGAGCCGCGCGCCGGCGGCTGCAA
GCCTGCGCAGCGGGGGCCGGCCTGTCAAGCTCACTGGTCGTGCCTCGTCCTCCCGTGCTCGTGGAAGCGGCAGCTGGCGC
TGGACTGGCGTGAGGAAGATGGAAAGCGGCAGCCCCAATCGGACTTCCACGGCAGGATCGCCACGCTGCCCATCCGGAAG
AGACAGTTGGCGACTTCGATGGAGAGCAGGCCGGCGCTGCAGCCTGCAGCCCATCCTGTCCTGGCTGCAGTTGACGACGA
GTACGCCAATGTCCTTGGCGCTCACGCCTGTCTGGTGCAGAAGACGGCGCCGAACATGATGGCCTCGGCCTCGATCGAGC
CACACCTCTGCCATGCAAGGGTTCGATGGCTCGATGAGCACGGCGATGAAGCTATGCTGAGGAGGGCGCGTCTCAACACT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis