Browse Element(s) Details


OsAffx.26249.1.S1_at

Description tigr:9632.m02869
TID=OsAffx.26249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3027011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30240Os.15516.1.S1_at11/114+17854777..17862047Protein kinase domain containing protein, expressed
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30270OsAffx.26249.1.S1_at11/114+17881966..17885176Protein kinase domain containing protein
LOC_Os04g30280OsAffx.14042.1.S1_at11/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280Os.37971.1.A1_at2/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30280OsAffx.18937.1.S1_at1/114+17890733..17896665wall-associated kinase 3, putative
LOC_Os04g30290OsAffx.26250.1.S1_at11/114+17899216..17900232hypothetical protein
LOC_Os04g30300Os.46697.1.S1_at11/114+17900520..17904143retrotransposon protein, putative, unclassified
LOC_Os04g30310NANA4+17904689..17906695hypothetical protein
LOC_Os04g30320OsAffx.26251.1.S1_at11/114+17908894..17910727F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26249.1.S1_at--969--6071Chr04:17884489..17884513 (25 bp)
GAGTATCTTCGGAACTTCCAGCTCA
LOC_Os04g30270
OsAffx.26249.1.S1_at--339--2151Chr04:17884446..17884470 (25 bp)
ACAGCTTTGGTATAGTTCTTCTTGA
LOC_Os04g30270
OsAffx.26249.1.S1_at--227--9591Chr04:17884427..17884451 (25 bp)
TCTTGAGCTCTTAACCCGGCGAATG
LOC_Os04g30270
OsAffx.26249.1.S1_at--920--8371Chr04:17884410..17884434 (25 bp)
GGCGAATGCCATTATCCGTGGATAA
LOC_Os04g30270
OsAffx.26249.1.S1_at--518--10391Chr04:17884399..17884423 (25 bp)
TTATCCGTGGATAAGGTCAGCCTCG
LOC_Os04g30270
OsAffx.26249.1.S1_at--459--7111Chr04:17884384..17884408 (25 bp)
GTCAGCCTCGCGTTAATATTTCAAG
LOC_Os04g30270
OsAffx.26249.1.S1_at--960--2951Chr04:17884347..17884371 (25 bp)
AAGGCCACTTCCTTGAGCTCATAGA
LOC_Os04g30270
OsAffx.26249.1.S1_at--107--2871Chr04:17884286..17884310 (25 bp)
AAGTGATCTGGCAACTCTAGCAAGC
LOC_Os04g30270
OsAffx.26249.1.S1_at--1089--6651Chr04:17884216..17884240 (25 bp)
GTTGCAGATGAATTGCGCCGGCGAA
LOC_Os04g30270
OsAffx.26249.1.S1_at--693--6231Chr04:17883577..17883601 (25 bp)
GATGGCTGCCGGTTGGAAAATCTTC
LOC_Os04g30270
OsAffx.26249.1.S1_at--667--791Chr04:17883552..17883576 (25 bp)
ATGTGTGTTGGATTTCCCAGCCAGC
LOC_Os04g30270
Target Sequence 
GAGTATCTTCGGAACTTCCAGCTCACCGATAAGAGTGATGTTTACAGCTTTGGTATAGTTCTTCTTGAGCTCTTAACCCG
GCGAATGCCATTATCCGTGGATAAGGTCAGCCTCGCGTTAATATTTCAAGAGGCCATGAGAGAAGGCCACTTCCTTGAGC
TCATAGACGCAGAAATATTGCACGAAGATAACATGGGATTGATAAGTGATCTGGCAACTCTAGCAAGCCAGTGCTTAATA
ATGACTAGCGAGAGCAGACCAACAATGAGCACGGTTGCAGATGAATTGCGCCGGCGAATGGCGGGACAAGTACAACAAGA
CCAAGGGGTACTTACAGAGATGGCTGCCGGTTGGAAAATCTTCATGTGTGTTGGATTTCCCAGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis