Browse Element(s) Details


OsAffx.3949.1.S1_at

Description tigr:9632.m02853
TID=OsAffx.3949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3011011/11wall-associated kinase 3, putative
LOC_Os04g302601/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed
LOC_Os04g30050OsAffx.26245.1.S1_at11/114+17756474..17756988expressed protein
LOC_Os04g30060OsAffx.3948.1.S1_at11/114+17757377..17758414Protein kinase domain containing protein
LOC_Os04g30070OsAffx.14040.1.S1_at11/114+17759569..17759910hypothetical protein
LOC_Os04g30080OsAffx.20733.1.S1_x_at1/114+17763661..17763891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g30090NANA4+17768135..17769452expressed protein
LOC_Os04g30100NANA4+17772449..17773222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g30110OsAffx.3949.1.S1_at11/114+17774477..17775280wall-associated kinase 3, putative
LOC_Os04g30120OsAffx.16467.1.S1_at9/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.2.S1_s_at7/114+17776629..17778057hypothetical protein
LOC_Os04g30120Os.26886.6.S1_s_at6/114+17776629..17778057hypothetical protein
LOC_Os04g30120OsAffx.3425.1.S1_at1/114+17776629..17778057hypothetical protein
LOC_Os04g30130OsAffx.8356.1.S1_x_at2/114+17783882..17789827hypothetical protein
LOC_Os04g30130Os.27088.1.A1_x_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30130OsAffx.14762.1.S1_at1/114+17783882..17789827hypothetical protein
LOC_Os04g30140OsAffx.26247.1.S1_at11/114+17793112..17793584hypothetical protein
LOC_Os04g30150Os.46012.2.S1_x_at8/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.27088.1.A1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified
LOC_Os04g30150Os.46012.3.S1_x_at5/114+17798259..17802482retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3949.1.S1_at--484--491Chr04:17774995..17775019 (25 bp)
ATCGGATGCCGAACACTTGCTTACA
LOC_Os04g30110
OsAffx.3949.1.S1_at--29--3371Chr04:17774927..17774951 (25 bp)
CACCGGATGCGTGGCCACATGTAAT
LOC_Os04g30110
OsAffx.3949.1.S1_at--988--3051Chr04:17774905..17774929 (25 bp)
AATAGCCAGGGCGACCTTGCAAGTC
LOC_Os04g30110
OsAffx.3949.1.S1_at--540--9291Chr04:17774878..17774902 (25 bp)
TCCGATGGAACCTGCTCTGGGATAG
LOC_Os04g30110
OsAffx.3949.1.S1_at--43--811Chr04:17774814..17774838 (25 bp)
ATGGGATCTGGTTCGATGACCGCTT
LOC_Os04g30110
OsAffx.3949.1.S1_at--736--9812Chr04:17774771..17774795 (25 bp)
TAACATGAGCCGTTGCAGCTACGCA
LOC_Os04g30110
OsAffx.3949.1.S1_at--941--5051Chr04:17774749..17774773 (25 bp)
GCAGCACTCGTGGAAGCATCAAACT
LOC_Os04g30110
OsAffx.3949.1.S1_at--532--10291Chr04:17774718..17774742 (25 bp)
TTTCCACGAGCTATGCGATGTCATC
LOC_Os04g30110
OsAffx.3949.1.S1_at--594--6751Chr04:17774690..17774714 (25 bp)
GTTCAATGACACATACGCCGGGCAG
LOC_Os04g30110
OsAffx.3949.1.S1_at--222--4051Chr04:17774597..17774621 (25 bp)
CGATCCCAAATACGCGTGCATCAGT
LOC_Os04g30110
OsAffx.3949.1.S1_at--607--2111Chr04:17774568..17774592 (25 bp)
ACAGTGACTGTTTCAACTCGTCTAA
LOC_Os04g30110
Target Sequence 
ATCGGATGCCGAACACTTGCTTACATCACCATCACAAAGCCGCAACAGCTGGAAAGCAGTAGTTTAACCACCGGATGCGT
GGCCACATGTAATAGCCAGGGCGACCTTGCAAGTCTCTCCGATGGAACCTGCTCTGGGATAGGCTGCTGTCAGACCACCA
TCCCAAAGGGGCTTCAGAACTATGGGATCTGGTTCGATGACCGCTTTAACACAGCGAAGATCTATAACATGAGCCGTTGC
AGCTACGCAGCACTCGTGGAAGCATCAAACTTCACCTTTTCCACGAGCTATGCGATGTCATCAGCGTTCAATGACACATA
CGCCGGGCAGGCGCCGTTGCTTCTGGATTGGGCCATTGGGAACCAAACGTGCGAGGCAGCGCGGCGGAATCCCAATCCCG
ATCCCAAATACGCGTGCATCAGTAACAACAGTGACTGTTTCAACTCGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis