Browse Element(s) Details


OsAffx.14762.1.S1_at

Description tigr:9633.m01780
TID=OsAffx.14762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1961010/11hypothetical protein
LOC_Os07g246301/11hypothetical protein
LOC_Os04g301301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19580OsAffx.16467.1.S1_at3/115+11383597..11386058hypothetical protein
LOC_Os05g19580Os.26886.6.S1_s_at2/115+11383597..11386058hypothetical protein
LOC_Os05g19580Os.26886.2.S1_s_at2/115+11383597..11386058hypothetical protein
LOC_Os05g19590Os.17740.1.S1_x_at1/115+11392507..11397016retrotransposon protein, putative, unclassified, expressed
LOC_Os05g19600NANA5+11397430..11398784Alpha-expansin 11 precursor, putative, expressed
LOC_Os05g19610OsAffx.14762.1.S1_at10/115+11400912..11405671hypothetical protein
LOC_Os05g19620Os.24057.1.A1_at11/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.7216.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.6363.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19630Os.7254.1.S1_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed
LOC_Os05g19630Os.7254.2.S1_x_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14762.1.S1_at--405--3791Chr05:11405449..11405473 (25 bp)
CTCGGGCTCGCGAACCTAAAGGTGG
LOC_Os05g19610
OsAffx.14762.1.S1_at--518--4291Chr05:11405435..11405459 (25 bp)
CCTAAAGGTGGCTATGGCGCGGCTC
LOC_Os05g19610
OsAffx.14762.1.S1_at--15--75710Chr11:12217716..12217735 (20 bp)
GGGCCTCCAATCCATGTAAACGCAT
NONE
OsAffx.14762.1.S1_at--1138--3472Chr08:6392282..6392306 (24 bp)
CATGTAAACGCATCCGATTGTCCGG
NONE
OsAffx.14762.1.S1_at--867--6511Chr05:11401826..11401850 (25 bp)
GATTTGGTACGCAAGGACTGTCAAC
LOC_Os05g19610
OsAffx.14762.1.S1_at--602--5731Chr05:11401811..11401835 (25 bp)
GACTGTCAACAGAGCTCGAGATATT
LOC_Os05g19610
OsAffx.14762.1.S1_at--665--2971Chr05:11401741..11401765 (25 bp)
AATGGTGGGCTCTAGGTTCATGGTT
LOC_Os05g19610
OsAffx.14762.1.S1_at--893--1011Chr05:11401728..11401752 (25 bp)
AGGTTCATGGTTTTGATCGTCGCAC
LOC_Os05g19610
OsAffx.14762.1.S1_at--1120--473Chr10:5814424..5814445 (22 bp)
ATCGTCGCACCCACGGCAATTAAGG
NONE
OsAffx.14762.1.S1_at--422--1251NONE
AGATTCGTAGGCGTGACATGCATCG
NONE
OsAffx.14762.1.S1_at--392--4071Chr05:11400981..11401005 (25 bp)
CGAGATGGGCGTAGAAGCTCTTTAT
LOC_Os05g19610
Target Sequence 
CTCGGGCTCGCGAACCTAAAGGTGGCTATGGCGCGGCTCGGCGGTGGTTCTAGCGGCGGCGAGCAGCGGCCGAAGGTGGC
TAAGGCGGCGGCGGCGGCGGCTTGGGAAGAACTCCGGGGCGTGACAGGTGGGGCCTCCAATCCATGTAAACGCATCCGAT
TGTCCGGAGGTGTATTTAGTCGCATGGAATTGACAGTTGGATTTGGTACGCAAGGACTGTCAACAGAGCTCGAGATATTT
GACCATGGTATAATGATCATAATTACTCAACTAAAATATAGCTTAATGGTGGGCTCTAGGTTCATGGTTTTGATCGTCGC
ACCCACGGCAATTAAGGACAGATTCGTAGGCGTGACATGCATCGAGATGGGCGTAGAAGCTCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis