Browse Element(s) Details


OsAffx.6363.1.S1_at

Description tigr:9637.m01916
TID=OsAffx.6363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g221008/11hypothetical protein
LOC_Os12g147203/11retrotransposon, putative, centromere-specific
LOC_Os05g196202/11expressed protein
LOC_Os11g180802/11retrotransposon, putative, centromere-specific
LOC_Os05g238301/11endo-1,4-beta-xylanase, putative
LOC_Os12g198901/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22060NANA9+13355473..13356645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22070Os.50915.1.S1_at2/119+13357357..13360396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22080NANA9+13363375..13365589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22090OsAffx.17841.1.S1_at11/119+13374891..13378386Phosphomannose isomerase type I family protein
LOC_Os09g22100OsAffx.17842.1.S1_at11/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.6363.1.S1_at8/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_x_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100Os.11595.1.S2_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.16438.1.S1_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22110OsAffx.22465.1.S1_at1/119+13389297..13394136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22120NANA9+13395570..13400463retrotransposon protein, putative, unclassified
LOC_Os09g22130OsAffx.17843.1.S1_at11/119+13402497..13403049hypothetical protein
LOC_Os09g22140NANA9+13404183..13404452hypothetical protein
LOC_Os09g22150OsAffx.18864.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22150OsAffx.8372.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6363.1.S1_at--635--5311NONE
GAAGGTTGCATGTCAGGTATTTGCT
NONE
OsAffx.6363.1.S1_at--568--7911NONE
GGTTGCATGTCAGGTATTTGCTTGG
NONE
OsAffx.6363.1.S1_at--873--4991NONE
GCATGTCAGGTATTTGCTTGGGTGA
NONE
OsAffx.6363.1.S1_at--506--8691Chr09:13382393..13382413 (21 bp)
TGTCAGGTATTTGCTTGGGTGAAAG
LOC_Os09g22100
OsAffx.6363.1.S1_at--561--9211Chr09:13382483..13382507 (25 bp)
TCCAAGTATTTTTTCATCTCACCAT
LOC_Os09g22100
OsAffx.6363.1.S1_at--217--2831Chr09:13382486..13382510 (25 bp)
AAGTATTTTTTCATCTCACCATGTC
LOC_Os09g22100
OsAffx.6363.1.S1_at--90--6892Chr12:8423417..8423534 (25 bp)
GTATTTTTTCATCTCACCATGTCAC
LOC_Os12g14720
OsAffx.6363.1.S1_at--931--177Chr12:8423516..8423536 (21 bp)
ATTTTTTCATCTCACCATGTCACTT
LOC_Os12g14720
OsAffx.6363.1.S1_at--27--103916Chr12:8423516..8423539 (24 bp)
TTTTCATCTCACCATGTCACTTTTG
LOC_Os12g14720
OsAffx.6363.1.S1_at--88--3346Chr11:15685325..15685813 (25 bp)
ATAAAGTTCTACACGGGATTAGCCT
NONE
OsAffx.6363.1.S1_at--902--12135Chr12:7221672..7222160 (25 bp)
AGTTCTACACGGGATTAGCCTTCTC
NONE
Target Sequence 
GAAGGTTGCATGTCAGGTATTTGCTTGGGTGAAAGAAAAGAGACCGAGTGTAAGGAATGCATGGATGATTGAAGAAGTTG
ATTGGGGACCAAACCAAGACCTTCTCCAAGTATTTTTTCATCTCACCATGTCACTTTTGGTCTATAGAAGACAAGAGATA
AAGTTCTACACGGGATTAGCCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis