Browse Element(s) Details


OsAffx.17842.1.S1_at

Description tigr:9637.m01917
TID=OsAffx.17842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2210011/11hypothetical protein
LOC_Os07g099904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g304503/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g211303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g259503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g223703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g176703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g052102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g230801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g249801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g281601/11hypothetical protein
LOC_Os09g046601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g026801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g284401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22060NANA9+13355473..13356645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22070Os.50915.1.S1_at2/119+13357357..13360396transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22080NANA9+13363375..13365589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22090OsAffx.17841.1.S1_at11/119+13374891..13378386Phosphomannose isomerase type I family protein
LOC_Os09g22100OsAffx.17842.1.S1_at11/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.6363.1.S1_at8/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.31892.5.S1_x_at2/119+13381297..13388336hypothetical protein
LOC_Os09g22100Os.11595.1.S2_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22100OsAffx.16438.1.S1_at1/119+13381297..13388336hypothetical protein
LOC_Os09g22110OsAffx.22465.1.S1_at1/119+13389297..13394136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22120NANA9+13395570..13400463retrotransposon protein, putative, unclassified
LOC_Os09g22130OsAffx.17843.1.S1_at11/119+13402497..13403049hypothetical protein
LOC_Os09g22140NANA9+13404183..13404452hypothetical protein
LOC_Os09g22150OsAffx.18864.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g22150OsAffx.8372.1.S1_at2/119+13405171..13408303transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17842.1.S1_at--739--100313Chr11:15687479..15687855 (25 bp)
TAGAGTTCGACAAGCCAGTAAGAAG
LOC_Os11g28160
OsAffx.17842.1.S1_at--872--7574Chr12:12630982..12631006 (25 bp)
GGGCGTGATCAACAGGTCAAGAACA
LOC_Os12g22370
OsAffx.17842.1.S1_at--464--6453Chr12:12630988..12631012 (25 bp)
GATCAACAGGTCAAGAACAAGGCGA
LOC_Os12g22370
OsAffx.17842.1.S1_at--367--1112Chr09:13385479..13385503 (25 bp)
AGTGAGCAAGCGACCAATTGCGTTT
LOC_Os09g22100
OsAffx.17842.1.S1_at--1031--5151Chr09:13385484..13385508 (25 bp)
GCAAGCGACCAATTGCGTTTGGAGT
LOC_Os09g22100
OsAffx.17842.1.S1_at--1080--4635Chr09:13385498..13385522 (25 bp)
GCGTTTGGAGTTTCTGCAGCGCCAA
LOC_Os09g22100
OsAffx.17842.1.S1_at--188--8558Chr12:12631108..12631131 (24 bp)
TGGAGTTTCTGCAGCGCCAAAACCA
LOC_Os12g22370
OsAffx.17842.1.S1_at--210--1711Chr09:13385539..13385563 (25 bp)
ACCAGCAGATTCAGGTAAAAGTTCT
LOC_Os09g22100
OsAffx.17842.1.S1_at--1013--2411Chr09:13385555..13385579 (25 bp)
AAAAGTTCTTTGCAGGTACCCGCTG
LOC_Os09g22100
OsAffx.17842.1.S1_at--340--9031Chr09:13385565..13385589 (25 bp)
TGCAGGTACCCGCTGTTGATGTGAA
LOC_Os09g22100
OsAffx.17842.1.S1_at--938--1011Chr09:13385568..13385592 (25 bp)
AGGTACCCGCTGTTGATGTGAAAAA
LOC_Os09g22100
Target Sequence 
TAGAGTTCGACAAGCCAGTAAGAAGGAATTGCAGGGGCGTGATCAACAGGTCAAGAACAAGGCGAGCACGTACACGCCGC
GGGCGAAGCCATCTTCGAGGCTTCCCAAGCCCATCTCTTTCTGGGAGCCCCCACCAGTGAGCAAGCGACCAATTGCGTTT
GGAGTTTCTGCAGCGCCAAAACCACCTCCCCCGCGACCAGCAGATTCAGGTAAAAGTTCTTTGCAGGTACCCGCTGTTGA
TGTGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis