Browse Element(s) Details


OsAffx.8372.1.S1_at

Description gb:NM_195388.1
DB_XREF= gi:37532135
TID=OsAffx.8372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBa0041L14.9), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1241011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g313704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g232904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g250403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g221502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g229302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g310402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g157302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g276741/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g287701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12390OsAffx.30401.1.S1_at11/1110+6662203..6662646hypothetical protein
LOC_Os10g12400Os.46711.1.S1_at10/1110+6668457..6671293nodulin MtN21 family protein, putative, expressed
LOC_Os10g12410OsAffx.8372.1.S1_at11/1110+6682340..6684893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12440OsAffx.8371.1.S1_at11/1110+6690345..6691555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12440Os.56292.1.S1_x_at1/1110+6690345..6691555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12450NANA10+6692133..6692482hypothetical protein
LOC_Os10g12460NANA10+6694203..6696387retrotransposon protein, putative, unclassified
LOC_Os10g12470NANA10+6697012..6700303retrotransposon protein, putative, unclassified
LOC_Os10g12480Os.43636.1.S1_at2/1110+6702163..6704477transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g12480OsAffx.27704.1.S1_at2/1110+6702163..6704477transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8372.1.S1_at--532--9591Chr10:6683803..6683827 (25 bp)
TCATCGTCAGTTCTTACCTCAAAGG
LOC_Os10g12410
OsAffx.8372.1.S1_at--1068--5451Chr10:6683872..6683896 (25 bp)
GAACTTTCTAGCTCCTAAAACACGT
LOC_Os10g12410
OsAffx.8372.1.S1_at--869--3471Chr10:6683898..6683922 (25 bp)
CAGGTCGTTCTGTCTTCAAGTTGAC
LOC_Os10g12410
OsAffx.8372.1.S1_at--312--1293Chr10:6684424..6684448 (25 bp)
AGATGTTAACAGTCTTCCTACCCAT
LOC_Os10g12410
OsAffx.8372.1.S1_at--269--3632Chr10:6684437..6684461 (25 bp)
CTTCCTACCCATTGCCATAAGAGTG
LOC_Os10g12410
OsAffx.8372.1.S1_at--158--9718Chr12:18628366..18628390 (25 bp)
TCAAGCCAGTTCACACTCGGTTAGT
LOC_Os12g31040
OsAffx.8372.1.S1_at--529--3052Chr10:6684572..6684596 (25 bp)
AATCGAGACAACATGCCAGCTTGAG
LOC_Os10g12410
OsAffx.8372.1.S1_at--238--5934Chr10:6684630..6684654 (25 bp)
GAGCATCTTATTGTCCACATCGTAC
LOC_Os10g12410
OsAffx.8372.1.S1_at--809--6053Chr10:6684666..6684690 (25 bp)
GAGATTGGTCCACTATACCTACACG
LOC_Os10g12410
OsAffx.8372.1.S1_at--629--6911Chr10:6684731..6684755 (25 bp)
GTATGTTTGTAACCGAGCTCATCCG
LOC_Os10g12410
OsAffx.8372.1.S1_at--106--157Chr12:18628714..18628738 (25 bp)
ATTACATGAAGGACGCCGAACCCAT
LOC_Os12g31040
Target Sequence 
TCATCGTCAGTTCTTACCTCAAAGGCATAGGTGGTGTGCGAAGGCTAGATTATTCGACAATACAGTAGAGAACTTTCTAG
CTCCTAAAACACGTACAGGTCGTTCTGTCTTCAAGTTGACAAAGAACATTAAGATGTTAACAGTCTTCCTACCCATTGCC
ATAAGAGTGGTCAAGCCAGTTCACACTCGGTTAGTGATAACAAAGTTGTGCTACTTTTTCAATCGAGTATCACAGAAGGT
TTTTGATCCTAAAGAGTTAGGCCCCCTTCAAACTTTTGCAATCGAGACAACATGCCAGCTTGAGATGTTTTTCCCCCTAG
CATACTTTAACATGATGGAGCATCTTATTGTCCACATCGTACCTCAGATTATCGAGATTGGTCCACTATACCTACACGAG
ATGTGGGCGTACGAGAGGTACATGTCCGTGCTGAAAGGGTATGTTTGTAACCGAGCTCATCCGGAAGGATCAATGATAGA
GGAGTACACAACTGAGGAGGTGGTCGAATGCTGCATAGATTACATGAAGGACGCCGAACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis