Browse Element(s) Details


Os.46711.1.S1_at

Description gb:CA763958
DB_XREF= gi:27545760
DB_XREF=AF53-Rpf_01C_N07_T7.ab1
CLONE=C0000319
TID=Os.46711.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) nodulin-like protein (OSJNBa0041L14.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1240010/11nodulin MtN21 family protein, putative, expressed
LOC_Os10g125001/11Integral membrane protein DUF6 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12380OsAffx.30400.1.S1_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12380OsAffx.30400.1.S1_x_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12390OsAffx.30401.1.S1_at11/1110+6662203..6662646hypothetical protein
LOC_Os10g12400Os.46711.1.S1_at10/1110+6668457..6671293nodulin MtN21 family protein, putative, expressed
LOC_Os10g12410OsAffx.8372.1.S1_at11/1110+6682340..6684893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12440OsAffx.8371.1.S1_at11/1110+6690345..6691555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12440Os.56292.1.S1_x_at1/1110+6690345..6691555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12450NANA10+6692133..6692482hypothetical protein
LOC_Os10g12460NANA10+6694203..6696387retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46711.1.S1_at--1101--4912Chr10:6716344..6716364 (21 bp)
GCTTGCTGGTACCTTGTTCAGTCAA
LOC_Os10g12500
Os.46711.1.S1_at--497--9691Chr10:6668907..6668931 (25 bp)
TCAAAGGTTCTCAAAGTGTACCCGT
LOC_Os10g12400
Os.46711.1.S1_at--28--9451Chr10:6668965..6668989 (25 bp)
TCGGAGGATTTCAGACAGCATTTGT
LOC_Os10g12400
Os.46711.1.S1_at--1150--9511Chr10:6669038..6669062 (25 bp)
TCTCAACCTTGTTACTGTAGTGTAC
LOC_Os10g12400
Os.46711.1.S1_at--990--1231Chr10:6669414..6669438 (25 bp)
AGTTGCTAAGCGAGGCCCAGCATAT
LOC_Os10g12400
Os.46711.1.S1_at--137--10151Chr10:6669436..6669460 (25 bp)
TATCCTCCAATGTTTAACCCACTAT
LOC_Os10g12400
Os.46711.1.S1_at--971--10331Chr10:6669448..6669472 (25 bp)
TTTAACCCACTATCAGTCATCTTCA
LOC_Os10g12400
Os.46711.1.S1_at--305--3331Chr10:6669471..6669495 (25 bp)
CACTGTTGTTTTTGACTCTATCCTT
LOC_Os10g12400
Os.46711.1.S1_at--610--5711Chr10:6669484..6669508 (25 bp)
GACTCTATCCTTATGGGCGATGATC
LOC_Os10g12400
Os.46711.1.S1_at--1018--6551Chr10:6671116..6671140 (25 bp)
GATTCTACAAAGGTTCTCGAAGCTA
LOC_Os10g12400
Os.46711.1.S1_at--29--1051NONE
AGGTGAGCATGCACTTACACTGGTT
NONE
Target Sequence 
GCTTGCTGGTACCTTGTTCAGTCAAAGGTTCTCAAAGTGTACCCGTATAAATATTGGTCTTCCATGGTGACATGCTTGGT
CGGAGGATTTCAGACAGCATTTGTTGGANTCATATTAAGGAGAGACAAGAATGCTTGGATGCTNGGATGGGATCTCAACC
TTGTTACTGTAGTGTACTCGGGGGCACTTGCAACAGCTGGAAAATATAGCCTAAATTCATGGGCAGTTGCTAAGCGAGGC
CCAGCATATCCTCCAATGTTTAACCCACTATCAGTCATCTTCACTGTTGTTTTTGACTCTATCCTTATGGGCGATGATCT
TACAGTAGGAAGTNNNNNNGNCANNNNNNTNNNNATNNNNNNNNNNNANNNNTTTCTCTCAGTGAAAGCATGAGAAGGTC
CATGGATGTAAACATGTAGATTCTACAAAGGTTCTCGAAGCTATAGAATAGAGTTGTATATGCAGACAGTGAAATGTATG
TAATTCAATAATTAAATGTGAAACAATATACTCGAGGAGGTGAGCATGCACTTACACTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis