Browse Element(s) Details


OsAffx.30400.1.S1_at

Description tigr:9638.m01122
TID=OsAffx.30400.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1238011/11hypothetical protein
LOC_Os12g2728011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12354Os.46525.2.S1_x_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12354Os.46525.1.S1_at11/1110+6633645..6643454NUMOD3 motif family protein, expressed
LOC_Os10g12380OsAffx.30400.1.S1_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12380OsAffx.30400.1.S1_x_at11/1110+6655256..6655610hypothetical protein
LOC_Os10g12390OsAffx.30401.1.S1_at11/1110+6662203..6662646hypothetical protein
LOC_Os10g12400Os.46711.1.S1_at10/1110+6668457..6671293nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30400.1.S1_at--813--3953Chr10:6655304..6655380 (25 bp)
CGGAGCACAGCTACATGGTGGAGAT
LOC_Os10g12380
OsAffx.30400.1.S1_at--124--2153Chr10:6655363..6655386 (24 bp)
ACAGCTACATGGTGGAGATTTGGAG
LOC_Os10g12380
OsAffx.30400.1.S1_at--1090--6513Chr10:6655378..6655402 (25 bp)
GATTTGGAGATCATCAGACAGTGTT
LOC_Os10g12380
OsAffx.30400.1.S1_at--1041--393Chr10:6655390..6655414 (25 bp)
ATCAGACAGTGTTTTGGCTAGCTTT
LOC_Os10g12380
OsAffx.30400.1.S1_at--72--3433Chr10:6655392..6655416 (25 bp)
CAGACAGTGTTTTGGCTAGCTTTAT
LOC_Os10g12380
OsAffx.30400.1.S1_at--1120--10232Chr10:6655402..6655426 (25 bp)
TTTGGCTAGCTTTATTTATGCGCGC
LOC_Os10g12380
OsAffx.30400.1.S1_at--1112--4853Chr10:6655406..6655430 (25 bp)
GCTAGCTTTATTTATGCGCGCGGAG
LOC_Os10g12380
OsAffx.30400.1.S1_at--264--1552Chr10:6655409..6655433 (25 bp)
AGCTTTATTTATGCGCGCGGAGAAC
LOC_Os10g12380
OsAffx.30400.1.S1_at--589--10533Chr10:6655437..6655461 (25 bp)
TTCAGATCACATGCAACACAGGATG
LOC_Os10g12380
OsAffx.30400.1.S1_at--700--3313Chr10:6655444..6655468 (25 bp)
CACATGCAACACAGGATGGAGCCGT
LOC_Os10g12380
OsAffx.30400.1.S1_at--217--3533Chr10:6655446..6655470 (25 bp)
CATGCAACACAGGATGGAGCCGTGG
LOC_Os10g12380
Target Sequence
CGGAGCACAGCTACATGGTGGAGATTTGGAGATCATCAGACAGTGTTTTGGCTAGCTTTATTTATGCGCGCGGAGAACNA
TTTCAGATCACATGCAACACAGGATGGAGCCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis