Browse Element(s) Details


OsAffx.30400.1.S1_x_at

Description tigr:9638.m01122
TID=OsAffx.30400.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2728011/11hypothetical protein
LOC_Os10g1238011/11hypothetical protein
LOC_Os04g072802/11expressed protein
LOC_Os12g246401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27254OsAffx.7712.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52173.1.S1_at11/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254OsAffx.10015.1.S1_s_at2/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27254Os.52100.1.S1_at1/1112+15995568..16002777Transferase family protein, expressed
LOC_Os12g27270Os.47463.1.S1_x_at6/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27270Os.14491.2.S1_x_at4/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27280OsAffx.30400.1.S1_x_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27280OsAffx.30400.1.S1_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27290OsAffx.31901.1.S1_at11/1112+16030978..16031346hypothetical protein
LOC_Os12g27300NANA12+16036494..16037946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27310Os.45796.1.S1_at9/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.2.S1_x_at8/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_x_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.3900.1.S1_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40360.1.S1_x_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.21921.1.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27320Os.40855.5.S1_x_at2/1112+16046753..16047640hypothetical protein
LOC_Os12g27330OsAffx.19849.1.S1_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27330OsAffx.19849.1.S1_x_at11/1112+16049552..16052193Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30400.1.S1_x_at--814--3953Chr10:6655304..6655380 (25 bp)
CGGAGCACAGCTACATGGTGGAGAT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--125--2153Chr10:6655363..6655386 (24 bp)
ACAGCTACATGGTGGAGATTTGGAG
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--1091--6513Chr10:6655378..6655402 (25 bp)
GATTTGGAGATCATCAGACAGTGTT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--1042--393Chr10:6655390..6655414 (25 bp)
ATCAGACAGTGTTTTGGCTAGCTTT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--71--3433Chr10:6655392..6655416 (25 bp)
CAGACAGTGTTTTGGCTAGCTTTAT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--1113--4853Chr10:6655406..6655430 (25 bp)
GCTAGCTTTATTTATGCGCGCGGAG
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--263--1552Chr10:6655409..6655433 (25 bp)
AGCTTTATTTATGCGCGCGGAGAAC
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--590--10533Chr10:6655437..6655461 (25 bp)
TTCAGATCACATGCAACACAGGATG
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--699--3313Chr10:6655444..6655468 (25 bp)
CACATGCAACACAGGATGGAGCCGT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--426--75913Chr10:6655550..6655574 (25 bp)
GGGCAAAACTGTCATTTTACGCGGT
LOC_Os10g12380
OsAffx.30400.1.S1_x_at--886--2555Chr10:6655556..6655580 (25 bp)
AACTGTCATTTTACGCGGTTTCTCT
LOC_Os10g12380
Target Sequence 
CGGAGCACAGCTACATGGTGGAGATTTGGAGATCATCAGACAGTGTTTTGGCTAGCTTTATTTATGCGCGCGGAGAACNA
TTTCAGATCACATGCAACACAGGATGGAGCCGTGGNTGGTGTTGGTGCTTGCGCTGGTGGCGGCGGCGGGCGTGCCGTCG
ATGGAAGCGCCGAGCGGAAGGGGAAGAAGAGAAGGGGCAAAACTGTCATTTTACGCGGTTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30400.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis