Browse Element(s) Details


OsAffx.31901.1.S1_at

Description tigr:9640.m02623
TID=OsAffx.31901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2729011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27270Os.47463.1.S1_x_at6/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27270Os.14491.2.S1_x_at4/1112+16004027..16014603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27280OsAffx.30400.1.S1_x_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27280OsAffx.30400.1.S1_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27290OsAffx.31901.1.S1_at11/1112+16030978..16031346hypothetical protein
LOC_Os12g27300NANA12+16036494..16037946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27310Os.45796.1.S1_at9/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.2.S1_x_at8/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_x_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.3900.1.S1_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40360.1.S1_x_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.21921.1.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27320Os.40855.5.S1_x_at2/1112+16046753..16047640hypothetical protein
LOC_Os12g27330OsAffx.19849.1.S1_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27330OsAffx.19849.1.S1_x_at11/1112+16049552..16052193Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31901.1.S1_at--887--1271Chr12:16031036..16031060 (25 bp)
AGATCGGAGGATGCCTTGAGGTGAT
LOC_Os12g27290
OsAffx.31901.1.S1_at--70--1051Chr12:16031054..16031078 (25 bp)
AGGTGATAGTGAGGAGGTCCAGCCT
LOC_Os12g27290
OsAffx.31901.1.S1_at--304--4671Chr12:16031114..16031138 (25 bp)
GCGGTGATGGCTCGGAGAAGACAAT
LOC_Os12g27290
OsAffx.31901.1.S1_at--1065--5591Chr12:16031133..16031157 (25 bp)
GACAATGATGGCAGCTAGGGCAGAG
LOC_Os12g27290
OsAffx.31901.1.S1_at--252--10671Chr12:16031163..16031187 (25 bp)
TTCCAATTGGGTGGAGGTCATAGGA
LOC_Os12g27290
OsAffx.31901.1.S1_at--553--1031Chr12:16031177..16031201 (25 bp)
AGGTCATAGGATGCCATGAGAAGGC
LOC_Os12g27290
OsAffx.31901.1.S1_at--226--1076Chr12:16031223..16031247 (25 bp)
AGGGAGGATGCTACGCGTCGGACGT
LOC_Os12g27290
OsAffx.31901.1.S1_at--412--7192Chr12:16031239..16031263 (25 bp)
GTCGGACGTCCGATAGTTCGCAAAT
LOC_Os12g27290
OsAffx.31901.1.S1_at--774--8112Chr12:16031242..16031266 (25 bp)
GGACGTCCGATAGTTCGCAAATATC
LOC_Os12g27290
OsAffx.31901.1.S1_at--1115--10031Chr12:16031252..16031276 (25 bp)
TAGTTCGCAAATATCGGATGCCCAA
LOC_Os12g27290
OsAffx.31901.1.S1_at--804--251Chr12:16031262..16031286 (25 bp)
ATATCGGATGCCCAACCTCTCACTG
LOC_Os12g27290
Target Sequence 
AGATCGGAGGATGCCTTGAGGTGATAGTGAGGAGGTCCAGCCTCCAGATTTGGCAGCGGCAGAGGAAGGCCGGAACGGGC
GGTGATGGCTCGGAGAAGACAATGATGGCAGCTAGGGCAGAGGGTGGTTCCAATTGGGTGGAGGTCATAGGATGCCATGA
GAAGGCAGAAAGAAGGGCCAGGCCTAGAGGGAGGATGCTACGCGTCGGACGTCCGATAGTTCGCAAATATCGGATGCCCA
ACCTCTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis