Browse Element(s) Details


OsAffx.19849.1.S1_x_at

Description tigr:9640.m02628
TID=OsAffx.19849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative hsr201 hypersensitivity-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2733011/11Transferase family protein
LOC_Os12g272202/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27280OsAffx.30400.1.S1_x_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27280OsAffx.30400.1.S1_at11/1112+16026609..16026963hypothetical protein
LOC_Os12g27290OsAffx.31901.1.S1_at11/1112+16030978..16031346hypothetical protein
LOC_Os12g27300NANA12+16036494..16037946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27310Os.45796.1.S1_at9/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.2.S1_x_at8/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_x_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.3900.1.S1_at5/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40360.1.S1_x_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310OsAffx.21921.1.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27310Os.40855.4.S1_at1/1112+16039357..16045578Transferase family protein
LOC_Os12g27320Os.40855.5.S1_x_at2/1112+16046753..16047640hypothetical protein
LOC_Os12g27330OsAffx.19849.1.S1_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27330OsAffx.19849.1.S1_x_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27340OsAffx.19850.1.S1_at10/1112+16072064..16073551hypothetical protein
LOC_Os12g27350OsAffx.17666.1.S1_at1/1112+16075841..16079351Transferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19849.1.S1_x_at--310--9611Chr12:16052033..16052057 (25 bp)
TCAGGTTCTTCCGCGCGGTCGACAG
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--669--2211Chr12:16051901..16051925 (25 bp)
ACAAGCTCGCTGTGGAGTGCACCGG
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--4--4511Chr12:16051816..16051840 (25 bp)
GCCGATGCCGACGTTTTGTGGCGCC
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--310--7653Chr12:16051750..16051773 (24 bp)
GGGAGGCCACTGTTTTACATGCAGC
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--391--8453Chr12:16051673..16051769 (25 bp)
GGCCACTGTTTTACATGCAGCCGTA
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--129--3871Chr12:16051668..16051764 (25 bp)
CTGTTTTACATGCAGCCGTATCCAA
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--820--1671Chr12:16051655..16051679 (25 bp)
AGCCGTATCCAAACACTTTGAGATA
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--374--2471Chr12:16051644..16051668 (25 bp)
AACACTTTGAGATACAAAATGTCGT
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--862--2431Chr12:16051629..16051653 (25 bp)
AAAATGTCGTTAAGAGCATGCCCAT
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--1075--8691Chr12:16051625..16051649 (25 bp)
TGTCGTTAAGAGCATGCCCATTAGA
LOC_Os12g27330
OsAffx.19849.1.S1_x_at--663--2731Chr12:16051618..16051642 (25 bp)
AAGAGCATGCCCATTAGACGTAGCA
LOC_Os12g27330
Target Sequence 
TCAGGTTCTTCCGCGCGGTCGACAGCGACCGTCGGCCGGCGAGGCCGGGGGACACCATCAGGGCGGCCCTCGCGGAGGCC
CTGGTGTACTACTACCCGATCGCCGGCCGCCTGCGGGAGCTGCCTAAGGGCCACAAGCTCGCTGTGGAGTGCACCGGCGA
AGGGGTGGTGTTTGTGGAGGCGGAGGCGGAGGCGACGTTGGAGGACTTCGGCGATCCGCCGATGCCGACGTTTTGTGGCG
CCGAGGGGTTCCTGTGCGATGTTGGAGATGCCAGAGTCATCGTTGGGAGGCCACTGTTTTACATGCAGCCGTATCCAAAC
ACTTTGAGATACAAAATGTCGTTAAGAGCATGCCCATTAGACGTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19849.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis