Browse Element(s) Details


OsAffx.19850.1.S1_at

Description tigr:9640.m02630
TID=OsAffx.19850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2734010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27320Os.40855.5.S1_x_at2/1112+16046753..16047640hypothetical protein
LOC_Os12g27330OsAffx.19849.1.S1_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27330OsAffx.19849.1.S1_x_at11/1112+16049552..16052193Transferase family protein
LOC_Os12g27340OsAffx.19850.1.S1_at10/1112+16072064..16073551hypothetical protein
LOC_Os12g27350OsAffx.17666.1.S1_at1/1112+16075841..16079351Transferase family protein
LOC_Os12g27370NANA12+16091863..16094964AT hook motif-containing protein, putative
LOC_Os12g27380OsAffx.31902.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27380Os.52631.1.S1_x_at11/1112+16095362..16099707hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19850.1.S1_at--355--371Chr12:16072163..16072187 (25 bp)
ATCAAGGAAATCGTGCTGGCAAGAA
LOC_Os12g27340
OsAffx.19850.1.S1_at--1051--5331NONE
GAAGTTACCAGCATATCAGTGTATT
NONE
OsAffx.19850.1.S1_at--1095--7632Chr12:16073171..16073195 (25 bp)
GGGAGATCAGATTTTGTCACAAGGG
LOC_Os12g27340
OsAffx.19850.1.S1_at--402--1051Chr12:16073192..16073216 (25 bp)
AGGGTACGGCTCATTGTGTATCTCT
LOC_Os12g27340
OsAffx.19850.1.S1_at--354--1651Chr12:16073239..16073263 (25 bp)
AGCGCAAGGCTTCATATCCGGTGGT
LOC_Os12g27340
OsAffx.19850.1.S1_at--935--251Chr12:16073252..16073276 (25 bp)
ATATCCGGTGGTGCCGTGACCGGAT
LOC_Os12g27340
OsAffx.19850.1.S1_at--833--9651Chr12:16073359..16073383 (25 bp)
TCAGCACAGCGGAGTTGGCCCTCGT
LOC_Os12g27340
OsAffx.19850.1.S1_at--102--2711Chr12:16073412..16073436 (25 bp)
AAGCTTGCAGCAAGCGGGCGGCTTT
LOC_Os12g27340
OsAffx.19850.1.S1_at--133--10771Chr12:16073435..16073459 (25 bp)
TTGACGGCGCTACTTCTCGTGACGA
LOC_Os12g27340
OsAffx.19850.1.S1_at--173--10591Chr12:16073448..16073472 (25 bp)
TTCTCGTGACGATGGCAGAGCTCAT
LOC_Os12g27340
OsAffx.19850.1.S1_at--716--5771Chr12:16073455..16073479 (25 bp)
GACGATGGCAGAGCTCATGGTGATA
LOC_Os12g27340
Target Sequence 
ATCAAGGAAATCGTGCTGGCAAGAAGTTACCAGCATATCAGTGTATTGGAAATTGGAGTAAGTACCAAGGATTGGGAACA
TGGGAGATCAGATTTTGTCACAAGGGTACGGCTCATTGTGTATCTCTCTCGGAGGGGTGACGGCGGCGCAGCGCAAGGCT
TCATATCCGGTGGTGCCGTGACCGGATCCAGCACCCCCTGGCTCAATGGGGCGTGGAGGAGGCTGAGCGGCGGCGCGCAT
GCTGGTGGCCGGTGCCGAGGAGGCCGGAGTCAGCACAGCGGAGTTGGCCCTCGTGCGGCCAGATTGGGAAGGGGCAACGG
TGAAGCTTGCAGCAAGCGGGCGGCTTTGACGGCGCTACTTCTCGTGACGATGGCAGAGCTCATGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis