Browse Element(s) Details


OsAffx.31902.1.S1_x_at

Description tigr:9640.m02633
TID=OsAffx.31902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2738011/11hypothetical protein
LOC_Os01g730707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27340OsAffx.19850.1.S1_at10/1112+16072064..16073551hypothetical protein
LOC_Os12g27350OsAffx.17666.1.S1_at1/1112+16075841..16079351Transferase family protein
LOC_Os12g27370NANA12+16091863..16094964AT hook motif-containing protein, putative
LOC_Os12g27380OsAffx.31902.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27380Os.52631.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27390OsAffx.31552.1.S1_x_at5/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.2.S1_at4/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.3.S1_x_at3/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_at2/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.22940.1.S1_s_at1/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_x_at1/1112+16103216..16110477hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31902.1.S1_x_at--354--8131Chr12:16097946..16097970 (25 bp)
GGACATACCTGACGTGCTCGAATTG
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--778--7892Chr12:16098391..16098415 (25 bp)
GGTTCTACCTATAGATGCTCTAGCT
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--328--2331Chr12:16098534..16098558 (25 bp)
AAAGTTGTGCTCACTGCCACAGACA
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--555--8992Chr12:16098566..16098590 (25 bp)
TGAAGCTGCATTTGTCCTCTTCGGA
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--980--9432Chr12:16098586..16098610 (25 bp)
TCGGACGAATTGCACATCGCCTAAT
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--108--5231Chr12:16098639..16098663 (25 bp)
GAAAATCCACCTGACTTTATCCTAG
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--1042--3032Chr12:16098742..16099093 (25 bp)
AATCCTTACAGCCTTCCATTGATGA
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--1016--1611Chr12:16099240..16099264 (25 bp)
AGCTGGACCGTCTGAATCTGAATCT
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--1059--9732Chr12:16099356..16099380 (25 bp)
TCAATACACCTGATGATCCACCTAT
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--1107--10172Chr12:16099378..16099402 (25 bp)
TATTAGCCCTTCTGTGCCTAGCAAA
LOC_Os12g27380
OsAffx.31902.1.S1_x_at--414--8092Chr12:16099510..16099534 (25 bp)
GGACCAACACTATAGCTTCAGTTCC
LOC_Os12g27380
Target Sequence 
GGACATACCTGACGTGCTCGAATTGAAAGAAAGAACTTCAAAGCCATATGGTTCTACCTATAGATGCTCTAGCTGTTGTT
ATATAGGAATGCCAGTGCCAAGATACAAAGTTGTGCTCACTGCCACAGACAATACTTCTGAAGCTGCATTTGTCCTCTTC
GGACGAATTGCACATCGCCTAATACACAGACCAGTGGAGTCTCTAATCGAAGAAAATCCACCTGACTTTATCCTAGCTGA
GATCCAAGCTCTTGTAGATCAAGCCTTTGTATGGAATGTCAGCTTCACTAAACACACAGTTAAACGGAATCAAGAATCCT
TACAGCCTTCCATTGATGATAAGGCCACAACTGAGCCAAAGAGTGGACAGAAAACTTTGGAACATCCATCTCTTCCTGCA
GCTGGACCGTCTGAATCTGAATCTGAACATAAGATCAAAGGAAATTTTGTCAATACACCTGATGATCCACCTATTAGCCC
TTCTGTGCCTAGCAAAAGTGCAAGCAAAAAAAGGACCAACACTATAGCTTCAGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31902.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis