Browse Element(s) Details


Os.52631.1.S1_x_at

Description gb:AK068420.1
DB_XREF= gi:32978438
TID=Os.52631.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152C24, full insert sequence.
FL= gb:AK068420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2738011/11hypothetical protein
LOC_Os01g730706/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27340OsAffx.19850.1.S1_at10/1112+16072064..16073551hypothetical protein
LOC_Os12g27350OsAffx.17666.1.S1_at1/1112+16075841..16079351Transferase family protein
LOC_Os12g27370NANA12+16091863..16094964AT hook motif-containing protein, putative
LOC_Os12g27380OsAffx.31902.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27380Os.52631.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27390OsAffx.31552.1.S1_x_at5/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.2.S1_at4/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.3.S1_x_at3/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_at2/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.22940.1.S1_s_at1/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_x_at1/1112+16103216..16110477hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52631.1.S1_x_at--821--2232Chr12:16098350..16098374 (25 bp)
ACAATTCATGTGACCGATGCTGCAG
LOC_Os12g27380
Os.52631.1.S1_x_at--779--7892Chr12:16098391..16098415 (25 bp)
GGTTCTACCTATAGATGCTCTAGCT
LOC_Os12g27380
Os.52631.1.S1_x_at--327--2331Chr12:16098534..16098558 (25 bp)
AAAGTTGTGCTCACTGCCACAGACA
LOC_Os12g27380
Os.52631.1.S1_x_at--556--8992Chr12:16098566..16098590 (25 bp)
TGAAGCTGCATTTGTCCTCTTCGGA
LOC_Os12g27380
Os.52631.1.S1_x_at--981--9432Chr12:16098586..16098610 (25 bp)
TCGGACGAATTGCACATCGCCTAAT
LOC_Os12g27380
Os.52631.1.S1_x_at--109--5231Chr12:16098639..16098663 (25 bp)
GAAAATCCACCTGACTTTATCCTAG
LOC_Os12g27380
Os.52631.1.S1_x_at--1123--1532Chr12:16098759..16098783 (25 bp)
AGCATTGTATCATCTGGTGCCCCAA
LOC_Os12g27380
Os.52631.1.S1_x_at--999--451Chr12:16098801..16098825 (25 bp)
ATCTCATCGTCTGCTTCAGGAGGCA
LOC_Os12g27380
Os.52631.1.S1_x_at--148--991Chr12:16098818..16098842 (25 bp)
AGGAGGCACCTCAACTATCGTACCA
LOC_Os12g27380
Os.52631.1.S1_x_at--1148--1112Chr12:16098927..16098951 (25 bp)
AGTGCATCTCTACAGCCAAGTCTAT
LOC_Os12g27380
Os.52631.1.S1_x_at--364--3111Chr12:16098964..16098988 (25 bp)
AATATGTTGTTAGCCCTGCAGCAGA
LOC_Os12g27380
Target Sequence 
ACAATTCATGTGACCGATGCTGCAGAACTTCAAAGCCATATGGTTCTACCTATAGATGCTCTAGCTGTTGTTATATAGGA
ATGCCAGTGCCAAGATACAAAGTTGTGCTCACTGCCACAGACAATACTTCTGAAGCTGCATTTGTCCTCTTCGGACGAAT
TGCACATCGCCTAATACACAGACCAGTGGAGTCTCTAATCGAAGAAAATCCACCTGACTTTATCCTAGCTGAGATCCAAG
CTCTTGTAGATCAAGCCTTTGTATGGAATGTCAGCTTCACTAAGCACACAGTTAAACGGAATCAAGAATCCTTACAGGTC
AATAGCATTGTATCATCTGGTGCCCCAAAACAGCACTTCCTGCCTATCTCATCGTCTGCTTCAGGAGGCACCTCAACTAT
CGTACCACTGAGCCCTGGCACTTCACTCCAAACACCACCCGCAGCAAGCGAAAGCAGTATTGAATAACAGTCATCAACCA
GAGGAAAGCAAAGTGCATCTCTACAGCCAAGTCTATCAACACCAACAAAATATGTTGTTAGCCCTGCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52631.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis