Browse Element(s) Details


OsAffx.11270.1.S1_x_at

Description tigr:9629.m02960
TID=OsAffx.11270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3179011/11hypothetical protein
LOC_Os01g034407/11hypothetical protein
LOC_Os01g034526/11hypothetical protein
LOC_Os12g215105/11Transposable element protein, putative, MuDR
LOC_Os12g108004/11transposon protein, putative, Mutator sub-class
LOC_Os12g204203/11SWIM zinc finger family protein
LOC_Os12g273901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_x_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31800Os.12821.1.S1_at5/111+17747377..17748137Histone H2A, putative, expressed
LOC_Os01g31810NANA1+17752195..17752860Histone H2B, putative, expressed
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11270.1.S1_x_at--680--8736Chr12:769643..769666 (24 bp)
TGTAATGCCCACTGATTGGACAAAC
NONE
OsAffx.11270.1.S1_x_at--58--3035Chr01:1381007..1381031 (25 bp)
AATGCCCACTGATTGGACAAACGAG
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--396--8816Chr01:1381016..1381040 (25 bp)
TGATTGGACAAACGAGGACTTCTCG
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--65--1616Chr01:1381023..1381047 (25 bp)
ACAAACGAGGACTTCTCGGGACTTG
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--605--9433Chr01:1381038..1381059 (22 bp)
TCGGGACTTGTTATCTCAGAGGAGC
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--879--8113Chr01:1381041..1381510 (25 bp)
GGACTTGTTATCTCAGAGGAGCATC
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--417--451Chr01:17745347..17745371 (25 bp)
ATCTCAGAGGAGCATCATGTACCCT
LOC_Os01g31790
OsAffx.11270.1.S1_x_at--553--9631Chr01:17745344..17745368 (25 bp)
TCAGAGGAGCATCATGTACCCTGGG
LOC_Os01g31790
OsAffx.11270.1.S1_x_at--159--3515Chr01:1381065..1381089 (25 bp)
CATGTACCCTGGGAATACAAGGATA
LOC_Os01g03440
OsAffx.11270.1.S1_x_at--659--3191Chr01:17744942..17745339 (25 bp)
CAAGGATAACAAGGGCAATCCAAGG
LOC_Os01g31790
OsAffx.11270.1.S1_x_at--735--7771Chr01:17744916..17744940 (25 bp)
GGTGCACATTCACTTTATGGATCGA
LOC_Os01g31790
Target Sequence 
TGTAATGCCCACTGATTGGACAAACGAGGACTTCTCGGGACTTGTTATCTCAGAGGAGCATCATGTACCCTGGGAATACA
AGGATAACAAGGGCAATCCAAGGAGGTGCACATTCACTTTATGGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11270.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis