Browse Element(s) Details


Os.19184.1.S1_at

Description gb:AK065149.1
DB_XREF= gi:32975167
TID=Os.19184.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1080D07.28 (B1080D07.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B07, full insert sequence.
FL= gb:AK104357.1 gb:AK106095.1 gb:AK065149.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3177010/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific
LOC_Os01g31750OsAffx.667.1.S1_at11/111+17704455..17707193transposon protein, putative, Mutator sub-class
LOC_Os01g31760OsAffx.23465.2.S1_at10/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31760OsAffx.23465.1.S1_x_at9/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_x_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31800Os.12821.1.S1_at5/111+17747377..17748137Histone H2A, putative, expressed
LOC_Os01g31810NANA1+17752195..17752860Histone H2B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19184.1.S1_at--564--6711Chr01:17728350..17728374 (25 bp)
GTTCGATTACTCTCATGTTCCTGGA
LOC_Os01g31770
Os.19184.1.S1_at--449--4791Chr01:17728383..17728407 (25 bp)
GCTCCATCGTGGTCGTCATAGGCAT
LOC_Os01g31770
Os.19184.1.S1_at--471--10571NONE
TTCTTTTGTGGTGCAGAAGCTCTGT
NONE
Os.19184.1.S1_at--1113--9631Chr01:17730735..17730759 (25 bp)
TCAGAAGGACTTTTCGGGCTGGTGT
LOC_Os01g31770
Os.19184.1.S1_at--900--9831Chr01:17730804..17730933 (25 bp)
TAAAGCAACTAAGCTGGCGTTTCTT
LOC_Os01g31770
Os.19184.1.S1_at--387--10171Chr01:17731002..17731026 (25 bp)
TATACTTTACTGTCATTTGGGAAGC
LOC_Os01g31770
Os.19184.1.S1_at--929--2711Chr01:17731023..17731047 (25 bp)
AAGCAGCTAGTGTGATCTTCAGTTT
LOC_Os01g31770
Os.19184.1.S1_at--590--1211Chr01:17731043..17731067 (25 bp)
AGTTTTTCTGGTCACAATCATTAGT
LOC_Os01g31770
Os.19184.1.S1_at--82--4191Chr01:17731171..17731195 (25 bp)
CCCTTCAATATCGTCTAAGCCTGAT
LOC_Os01g31770
Os.19184.1.S1_at--52--7771Chr01:17731249..17731273 (25 bp)
GGTGATGCAACCTTTTATGCACCTG
LOC_Os01g31770
Os.19184.1.S1_at--623--10131Chr01:17731264..17731288 (25 bp)
TATGCACCTGTTGCCTTGTTGCTTC
LOC_Os01g31770
Target Sequence 
GTTCGATTACTCTCATGTTCCTGGACGAGCTGTGCTCCATCGTGGTCGTCATAGGCATGGTGCCCGACCGACATCATCTG
GGCTCAGAATCAATCTTCTTTTGTGGTGCAGAAGCTCTGTGTTCAGGGAGATGAAGAAATATCAGAAGGACTTTTCGGGC
TGGTGTGGTGAATGTAAACGTGAGAAGAAGGAGAGGCAGATTCATGCTGTTAAAGCAACTAAGCTGGCGTTTCTTAGGGG
TGCTGGAGGGGCAACGATTTAAATTATATTTGCTTTATGTATTTATACAATCTTGTATTATATTATACTTTACTGTCATT
TGGGAAGCAGCTAGTGTGATCTTCAGTTTTTCTGGTCACAATCATTAGTGGTCACAGGTGTATGTAAATTGAACTTGTGA
TCAAATCAAGCTGAAACTTAGTGGAGGATCGCATGTTAGTGTGAAAGGAGTGCTAGCAGAATAGCAACTCCCCCCTTCAA
TATCGTCTAAGCCTGATATTGTACAGATAAGTGCATCTGCATAGAATGTTCTAATCTGTCATCAAATTTGGGTGATGCAA
CCTTTTATGCACCTGTTGCCTTGTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis