Browse Element(s) Details


OsAffx.667.1.S1_at

Description gb:NM_193703.1
DB_XREF= gi:34914489
GEN=B1080D07.26
TID=OsAffx.667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1080D07.26 (B1080D07.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3175011/11transposon protein, putative, Mutator sub-class
LOC_Os11g032807/11transposon protein, putative, Mutator sub-class
LOC_Os03g628103/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31700OsAffx.21167.1.S1_at5/111+17679943..17680260hypothetical protein
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific
LOC_Os01g31750OsAffx.667.1.S1_at11/111+17704455..17707193transposon protein, putative, Mutator sub-class
LOC_Os01g31760OsAffx.23465.2.S1_at10/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31760OsAffx.23465.1.S1_x_at9/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.667.1.S1_at--684--7332Chr03:35474773..35474797 (25 bp)
GTGCATCGATTCAGGGCAGCATATG
LOC_Os03g62810
OsAffx.667.1.S1_at--202--5612Chr01:17706154..17706178 (25 bp)
GAAATTGATCCCTTCATTACCTGAC
LOC_Os01g31750
OsAffx.667.1.S1_at--1102--6412Chr01:17706200..17706224 (25 bp)
GATCATGGGTTTTTCTTGGCACCAC
LOC_Os01g31750
OsAffx.667.1.S1_at--402--10872Chr01:17706215..17706239 (25 bp)
TTGGCACCACCCATTCTGAAGAAAT
LOC_Os01g31750
OsAffx.667.1.S1_at--527--5993Chr03:35475162..35475186 (25 bp)
GAGACTAGTATCATGGCTGCTCCAA
LOC_Os03g62810
OsAffx.667.1.S1_at--189--9771Chr01:17706728..17706973 (25 bp)
TAATGGCATACCCTCCTAGATCAAG
LOC_Os01g31750
OsAffx.667.1.S1_at--1012--10034Chr12:408082..408105 (24 bp)
TAGATCAAGATCACTTACTGGCTCC
NONE
OsAffx.667.1.S1_at--451--9532Chr01:17707005..17707029 (25 bp)
TCTAACATGATTGTAGCCTTGCCAT
LOC_Os01g31750
OsAffx.667.1.S1_at--403--6192Chr01:17707038..17707062 (25 bp)
GAGGAAACACCTACAGTTGCACCAA
LOC_Os01g31750
OsAffx.667.1.S1_at--373--7131Chr01:17707091..17707115 (25 bp)
GTCATCATGTTCTAGTACTCCTGGT
LOC_Os01g31750
OsAffx.667.1.S1_at--171--7012Chr01:17707105..17707129 (25 bp)
GTACTCCTGGTAGCCCAGCTATGAG
LOC_Os01g31750
Target Sequence 
GTGCATCGATTCAGGGCAGCATATGAGAAATTGATCCCTTCATTACCTGACAAGGCACAATGGCCAAAAGCTGATCATGG
GTTTTTCTTGGCACCACCCATTCTGAAGAAATCAGCTGGGAGACCAAGAACTATGAGGTACAAAGGATGGACTGAGAAAG
GAAGCAAAAGGAGTAGGAGGCACAAATGCCCAATTTGCAAGAGTTATGGCCATCATTGGCACAATTGCAAAGAGGGTGAT
CCAGAGGAAGTAGCAGCAATGCTTGCTGAAAGAGGGCCACCAAAGAAGAGAACGAAGAAAACTAATGAAGCAACCTCAGA
GACTAGTATCATGGCTGCTCCAATAGTTACACCAATAATGGCATACCCTCCTAGATCAAGATCACTTACTGGCTCCAACC
AACCTGAGCCATCTAACATGATTGTAGCCTTGCCATGTCTGGGGGAGGAAACACCTACAGTTGCACCAAAAATGACCAAG
AGCAAGACAAAGGGAAAGTCATCATGTTCTAGTACTCCTGGTAGCCCAGCTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis