Browse Element(s) Details


OsAffx.21167.1.S1_at

Description gb:NM_193699.1
DB_XREF= gi:34914481
GEN=B1080D07.16
TID=OsAffx.21167.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1080D07.16 (B1080D07.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g317005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified
LOC_Os01g31660NANA1+17657233..17659658retrotransposon protein, putative, unclassified
LOC_Os01g31670NANA1+17662625..17664953retrotransposon protein, putative, unclassified
LOC_Os01g31680Os.1606.2.S1_a_at10/111+17668048..17673251Sec-independent protein translocase TatC containing protein, expressed
LOC_Os01g31690Os.28438.1.S1_x_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_s_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.2.S1_a_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_x_at8/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31700OsAffx.21167.1.S1_at5/111+17679943..17680260hypothetical protein
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific
LOC_Os01g31750OsAffx.667.1.S1_at11/111+17704455..17707193transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21167.1.S1_at--813--7551Chr01:17678482..17678828 (25 bp)
GGGCCTGGATCCACACCGACTGGAC
NONE
OsAffx.21167.1.S1_at--896--7291Chr01:17678841..17678865 (25 bp)
GTGCCCACAAGCTCCTAAGCGGTAG
NONE
OsAffx.21167.1.S1_at--667--9251Chr01:17678853..17678877 (25 bp)
TCCTAAGCGGTAGATCTGGAGCGGC
NONE
OsAffx.21167.1.S1_at--331--1872Chr01:17678913..17678937 (25 bp)
ACGAGCGGCCACCAGATTTGGATGC
NONE
OsAffx.21167.1.S1_at--538--1131Chr01:17678951..17678975 (25 bp)
AGTGCGCGCAGCAAGCTCCATGGTG
NONE
OsAffx.21167.1.S1_at--466--1731Chr01:17679940..17679964 (25 bp)
ACCATGGAGCTTGCTGTGCGCACTT
NONE
OsAffx.21167.1.S1_at--207--4131Chr01:17679967..17679991 (25 bp)
CGCGGTCATAGCATCCAAATCTGGT
LOC_Os01g31700
OsAffx.21167.1.S1_at--303--572Chr01:17679979..17680003 (25 bp)
ATCCAAATCTGGTGGCCGCTCGTCG
LOC_Os01g31700
OsAffx.21167.1.S1_at--328--4792Chr01:17680039..17680063 (25 bp)
GCTCCAGATCTACCGCTTAGAAGCT
LOC_Os01g31700
OsAffx.21167.1.S1_at--141--10451Chr01:17680055..17680079 (25 bp)
TTAGAAGCTTGTGGGCACCGGATCC
LOC_Os01g31700
OsAffx.21167.1.S1_at--413--2931Chr01:17680159..17680183 (25 bp)
AAGGCAAGCCCCAGGCAAGTTTCTG
LOC_Os01g31700
Target Sequence 
GGGCCTGGATCCACACCGACTGGACCGCACGGATCCGGTGCCCACAAGCTCCTAAGCGGTAGATCTGGAGCGGCGGCAAC
ACCATGGTTTGGGGGTGAGGCCGCGAACGACGAGCGGCCACCAGATTTGGATGCTAGGACCGCGGGGAGTGCGCGCAGCA
AGCTCCATGGTGAGCGGCAGCGCAAGCGAGCCAGGGGCGACGCTGCAACTCAGCTCACCTGCAGCGTCGCCCCTGGCTCG
CTTGTGCTGCAGCTCACCATGGAGCTTGCTGTGCGCACTTCCCGCGGTCATAGCATCCAAATCTGGTGGCCGCTCGTCGT
TCGCGGCCTCACCCCAAACCATGGTGTCGCCGCCGCTCCAGATCTACCGCTTAGAAGCTTGTGGGCACCGGATCCGCGCG
GTCCAGTCGCTGGAGAAAGGAGGGGTGGAGTTTCTGGTGGAGAAGGTGGTGGAGGCTACGACAAGAAGAGGAGGAAGGCA
AGCCCCAGGCAAGTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis