Browse Element(s) Details


Os.1606.2.S1_a_at

Description gb:AB050885.1
DB_XREF= gi:13442817
GEN=OsTATC
TID=Os.1606.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsTATC (B1080D07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) OsTATC mRNA, complete cds.
FL= gb:AB050885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3168010/11Sec-independent protein translocase TatC containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31629OsAffx.2127.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629Os.5345.1.S1_at11/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.25836.1.S1_at4/111+17636151..17652606expressed protein
LOC_Os01g31629OsAffx.19690.1.S1_at1/111+17636151..17652606expressed protein
LOC_Os01g31629Os.17546.2.S1_x_at1/111+17636151..17652606expressed protein
LOC_Os01g31650Os.47130.4.A1_x_at6/111+17653740..17655084retrotransposon protein, putative, unclassified
LOC_Os01g31660NANA1+17657233..17659658retrotransposon protein, putative, unclassified
LOC_Os01g31670NANA1+17662625..17664953retrotransposon protein, putative, unclassified
LOC_Os01g31680Os.1606.2.S1_a_at10/111+17668048..17673251Sec-independent protein translocase TatC containing protein, expressed
LOC_Os01g31690Os.28438.1.S1_x_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_s_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.2.S1_a_at11/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31690Os.28438.4.S1_x_at8/111+17676184..17677662Oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed
LOC_Os01g31700OsAffx.21167.1.S1_at5/111+17679943..17680260hypothetical protein
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0009977molecular_functiondelta-pH-dependent transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1606.2.S1_a_at--602--9751Chr01:17669358..17669382 (25 bp)
TAATAGCATTTGTTCTTCCGGGTTT
LOC_Os01g31680
Os.1606.2.S1_a_at--798--5371Chr01:17669323..17669347 (25 bp)
GAACGTAAATTCCTAGGGCCCATTG
LOC_Os01g31680
Os.1606.2.S1_a_at--476--51Chr01:17669302..17669326 (25 bp)
ATTGTTCTGGGCTCTTCTGTACTAT
LOC_Os01g31680
Os.1606.2.S1_a_at--472--3651Chr01:17669289..17669313 (25 bp)
CTTCTGTACTATTCTACCTTGGCAT
LOC_Os01g31680
Os.1606.2.S1_a_at--606--10851Chr01:17669271..17669295 (25 bp)
TTGGCATTTTCTTCTCCTACACGGT
LOC_Os01g31680
Os.1606.2.S1_a_at--726--4791Chr01:17669242..17669266 (25 bp)
GCTCCTGCAGCATTGAATTTCTTCG
LOC_Os01g31680
Os.1606.2.S1_a_at--187--5211Chr01:17669228..17669252 (25 bp)
GAATTTCTTCGTGAACTACGCAGAT
LOC_Os01g31680
Os.1606.2.S1_a_at--288--7931NONE
GGATTATCTTTTCAGGTCCCTGTTA
NONE
Os.1606.2.S1_a_at--707--8211Chr01:17668352..17668376 (25 bp)
GGCAAGTCGGTTTGGTTTCTAGTGA
LOC_Os01g31680
Os.1606.2.S1_a_at--995--3651Chr01:17668269..17668293 (25 bp)
CTTACACCGTCGACAGATCCGTTGA
LOC_Os01g31680
Os.1606.2.S1_a_at--1073--1271Chr01:17668255..17668279 (25 bp)
AGATCCGTTGACTCAGATGCTCTTG
LOC_Os01g31680
Target Sequence 
TAATAGCATTTGTTCTTCCGGGTTTAACAAGGGATGAACGTAAATTCCTAGGGCCCATTGTTCTGGGCTCTTCTGTACTA
TTCTACCTTGGCATTTTCTTCTCCTACACGGTTCTTGCTCCTGCAGCATTGAATTTCTTCGTGAACTACGCAGATGGGGC
AGTGGAATCGTTATGGTCGATTGATCAGTATTTTGAGTTTGTGCTTGTGCTTTTATTCAGCACAGGATTATCTTTTCAGG
TCCCTGTTATCCAGCTACTGCTGGGGCAAGTCGGTTTGGTTTCTAGTGACCAAATGCTTTCCATCTGGAGATATGTTGTT
GTTGGCGCTGTAGTTGCTGCTGCTGTGCTTACACCGTCGACAGATCCGTTGACTCAGATGCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1606.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis