Browse Element(s) Details


OsAffx.25836.1.S1_at

Description tigr:9632.m00114
TID=OsAffx.25836.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0210011/11hypothetical protein
LOC_Os01g316294/11expressed protein
LOC_Os11g176701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25836.1.S1_at--518--9877Chr10:8574941..8574961 (21 bp)
TACAGGTTAGTCAAGGCGAACCCTC
NONE
OsAffx.25836.1.S1_at--692--4834Chr09:8670012..8670036 (25 bp)
GAACCCTCCCCATGTCGAAGACTAT
NONE
OsAffx.25836.1.S1_at--56--13310Chr12:11122076..11122100 (25 bp)
AGAGGCAGGGAATCGCAGCCAAGCT
NONE
OsAffx.25836.1.S1_at--746--1698Chr12:11122092..11122116 (25 bp)
AGCCAAGCTAGAGGCCTCCTGGGCG
NONE
OsAffx.25836.1.S1_at--387--4111Chr04:671326..671350 (25 bp)
CGCAAGGCGAAGAGCATGTGTCGAA
LOC_Os04g02100
OsAffx.25836.1.S1_at--404--5799Chr11:9866253..9866277 (25 bp)
GACGACTTCGCCGTAGCAGGTTCGG
NONE
OsAffx.25836.1.S1_at--507--4236Chr12:11122178..11122202 (25 bp)
CCGGGAGGGCCGAAGAAGCTATCCT
NONE
OsAffx.25836.1.S1_at--725--53712Chr12:11122189..11122213 (25 bp)
GAAGAAGCTATCCTGGCCCATCAAG
NONE
OsAffx.25836.1.S1_at--308--5611Chr04:671437..671461 (25 bp)
GACAATAACCTGTTGGCCCGCTGAG
LOC_Os04g02100
OsAffx.25836.1.S1_at--30--4754Chr06:19930407..19930427 (21 bp)
GCTGAGGGCCCATGGACCGCAATTA
NONE
OsAffx.25836.1.S1_at--859--1792Chr11:9866369..9866840 (25 bp)
ACCGCAATTACGCTATGTATCCATG
NONE
Target Sequence 
TACAGGTTAGTCAAGGCGAACCCTCCCCATGTCGAAGACTATGGAGCAAGGACGGCGAGAGGCAGGGAATCGCAGCCAAG
CTAGAGGCCTCCTGGGCGAAGGGCGCAAGGCGAAGAGCATGTGTCGAAGGGGGACGACTTCGCCGTAGCAGGTTCGGCCC
CGGGAGGGCCGAAGAAGCTATCCTGGCCCATCAAGCCCAGGGGTTAATTGGGTCGACAATAACCTGTTGGCCCGCTGAGG
GCCCATGGACCGCAATTACGCTATGTATCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis