Browse Element(s) Details


Os.54121.1.S1_s_at

Description gb:AK102051.1
DB_XREF= gi:32987260
TID=Os.54121.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082B12, full insert sequence.
FL= gb:AK102051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0207011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54121.1.S1_s_at--947--5911Chr04:652951..652975 (25 bp)
GAGCTTTCCATGTTAGATGATCCAG
LOC_Os04g02070
Os.54121.1.S1_s_at--489--10071Chr04:652856..652880 (25 bp)
TAGGGATACAAATGGTCTGCTGGAT
LOC_Os04g02070
Os.54121.1.S1_s_at--457--9491Chr04:652841..652865 (25 bp)
TCTGCTGGATGGGTTATTGGTCCAT
LOC_Os04g02070
Os.54121.1.S1_s_at--550--5171Chr04:652797..652821 (25 bp)
GCAAGAATGAGTTCCAGAGTGACAT
LOC_Os04g02070
Os.54121.1.S1_s_at--532--3471Chr04:652704..652728 (25 bp)
CAGGCGGAAGCATACGTCAATCTAT
LOC_Os04g02070
Os.54121.1.S1_s_at--789--8991Chr04:652658..652682 (25 bp)
TGAAGGTACTTTTGATTGCCAGAAG
LOC_Os04g02070
Os.54121.1.S1_s_at--410--7931Chr04:652519..652543 (25 bp)
GGATTATTTTGCTCATGTTTTCCGA
LOC_Os04g02070
Os.54121.1.S1_s_at--236--651Chr04:652484..652508 (25 bp)
ATGCAGCATGTATACCCCAGAGATA
LOC_Os04g02070
Os.54121.1.S1_s_at--1108--10431Chr04:652459..652483 (25 bp)
TTACGACGTTCTGTGCAAGGCTTGT
LOC_Os04g02070
Os.54121.1.S1_s_at--602--2911Chr04:652431..652455 (25 bp)
AAGGATGAACTCTATTTCTCCTCCC
LOC_Os04g02070
Os.54121.1.S1_s_at--199--10591Chr04:652416..652440 (25 bp)
TTCTCCTCCCTCTCTATATATAGTT
LOC_Os04g02070
Target Sequence 
GAGCTTTCCATGTTAGATGATCCAGACAAAAATGATTCAGACGGAAACAATCCAAACTTGTTCATATTCTTATTGAATAA
CATAAAGCATTTTAATAGGGATACAAATGGTCTGCTGGATGGGTTATTGGTCCATAGGGAGCTCATTGAAGAGTGCAAGA
ATGAGTTCCAGAGTGACATGGAAAATTATACTAGTAGATATATGACTGCATCTTGGGGTCCAGCCATATCTTGTTTGAAC
AATCATACAGGCGGAAGCATACGTCAATCTATGAATGCATTCATTTCAAAGTTTGAAGGTACTTTTGATTGCCAGAAGGT
TTTGAAAGTTCCTGATAGTGAGCTAAAGCAGAATTTGCGAGATGATATAGAAAATTTAATTTTTCCAGCATATGAAATAT
CCTTTGAGGAACTGCAGAGAAATTCCAATTCAGGATTATTTTGCTCATGTTTTCCGAGAAATTTAACATGCAGCATGTAT
ACCCCAGAGATATTACGACGTTCTGTGCAAGGCTTGTTTGAAGGATGAACTCTATTTCTCCTCCCTCTCTATATATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54121.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis