Browse Element(s) Details


OsAffx.25156.4.S1_x_at

Description tigr:9632.m00113
TID=OsAffx.25156.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0209011/11hypothetical protein
LOC_Os10g176203/11hypothetical protein
LOC_Os12g191402/11hypothetical protein
LOC_Os09g146402/11hypothetical protein
LOC_Os04g234901/11retrotransposon protein, putative, unclassified
LOC_Os05g226601/11retrotransposon protein, putative, unclassified
LOC_Os09g048201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25156.4.S1_x_at--568--2916Chr12:11107475..11107499 (25 bp)
AAGGAGGCCTGTTACACTCTCCGGC
LOC_Os12g19140
OsAffx.25156.4.S1_x_at--58--2192Chr10:8571990..8572013 (24 bp)
ACACTCGATTTCTCTGAATGGACGC
LOC_Os10g17620
OsAffx.25156.4.S1_x_at--805--10612Chr04:664794..664818 (25 bp)
TTCGGCAGGATTCGTTCTCAGCCTC
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--2--3491Chr04:664789..664813 (25 bp)
CAGGATTCGTTCTCAGCCTCTTGCA
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--933--9411Chr04:664744..664768 (25 bp)
TCGGGAATTTTCCTGATTTCGCGAA
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--652--5296Chr09:2570195..2570219 (25 bp)
GAATGGCCTAGCAACACGCAGTGCT
LOC_Os09g04820
OsAffx.25156.4.S1_x_at--343--8351Chr04:664646..664670 (25 bp)
GGCGGCCGGGATTGTGCGAAGATTC
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--129--1811Chr04:664233..664520 (25 bp)
ACCCTGAGGCGTGCGGCCAAAAGGT
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--946--4651Chr04:664225..664249 (25 bp)
GCGTGCGGCCAAAAGGTTTGCGTTC
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--401--9091Chr04:664222..664246 (25 bp)
TGCGGCCAAAAGGTTTGCGTTCGAC
LOC_Os04g02090
OsAffx.25156.4.S1_x_at--620--9131Chr04:664207..664231 (25 bp)
TGCGTTCGACCTCCCGCTAAAAATT
LOC_Os04g02090
Target Sequence 
AAGGAGGCCTGTTACACTCTCCGGCTGGCCCTTAATGACCTTAGGGCGCGGGCGGAGGGTGCTCCGGGCGAAGGCGGGAC
TACACTCGATTTCTCTGAATGGACGCAGGAGGCGGCCGGCTCAGTTGTCGAAGTGGCGGGCGCCTACGGGGACTGTTGTG
CTCGTGTTTCGGCAGGATTCGTTCTCAGCCTCTTGCACGCGCACAGCTGCGACCACATCGGGAATTTTCCTGATTTCGCG
AAGGAAGAATGGCCTAGCAACACGCAGTGCTCCGGAGCTGCGTTAAGGGCCTTTCGGAAGGGGTTTTGGGAGGATGGCGG
CCGGGATTGTGCGAAGATTCGACTCCGCGAGAACCTTGAGAGGATCGCGAGGAACGAGGAGGCCGCTGCCGCTAACTCCG
AAAAGGATCCCGACCGTCGGAACGGTCACCCGGGCACGAGGGCGAAGGCGAAGGAGGCCAAGACCACCCTGAGGCGTGCG
GCCAAAAGGTTTGCGTTCGACCTCCCGCTAAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25156.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis