Browse Element(s) Details


OsAffx.25837.1.S1_at

Description tigr:9632.m00117
TID=OsAffx.25837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified
LOC_Os04g02140NANA4+697336..702030transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g02150Os.17971.1.S1_at11/114+706325..712800Eukaryotic initiation factor 3, gamma subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25837.1.S1_at--96--5431Chr04:684885..684909 (25 bp)
GAACCAGCGGGATCTTGTCCAGCTG
LOC_Os04g02120
OsAffx.25837.1.S1_at--573--1611Chr04:684865..684889 (25 bp)
AGCTGTCAAATTTCCGGTCATCACA
LOC_Os04g02120
OsAffx.25837.1.S1_at--966--8111Chr04:684780..684804 (25 bp)
GGACGGCAAACTCTACGGTTACAAG
LOC_Os04g02120
OsAffx.25837.1.S1_at--1023--5091Chr04:684612..684636 (25 bp)
GCACGTGGACGTTCAAGCAAGGTTT
LOC_Os04g02120
OsAffx.25837.1.S1_at--722--6431Chr04:684587..684611 (25 bp)
GATCATGTGATCTGGGCGAGCGTCC
LOC_Os04g02120
OsAffx.25837.1.S1_at--862--4071Chr04:684571..684595 (25 bp)
CGAGCGTCCCACACAAGTACAGGAA
LOC_Os04g02120
OsAffx.25837.1.S1_at--206--971Chr04:684544..684568 (25 bp)
AGGACCTCTTGGCTGAGATCTGGAT
LOC_Os04g02120
OsAffx.25837.1.S1_at--528--2131Chr04:684484..684508 (25 bp)
ACAGGTGCGCCGACCAGATGAGCTT
LOC_Os04g02120
OsAffx.25837.1.S1_at--1065--1291Chr04:684469..684493 (25 bp)
AGATGAGCTTTGGTGCCCTTCAGGC
LOC_Os04g02120
OsAffx.25837.1.S1_at--522--7251Chr04:684398..684422 (25 bp)
GTCCTCGACGATGTCTGCAACGATG
LOC_Os04g02120
OsAffx.25837.1.S1_at--238--1871Chr04:684367..684391 (25 bp)
ACGACGACGATCATCAGCGGAGCAG
LOC_Os04g02120
Target Sequence 
GAACCAGCGGGATCTTGTCCAGCTGTCAAATTTCCGGTCATCACAAGGAGGAGGAGATGGGGGTGCGTCCGCGTCGAGGC
CAAGATCGGCCACGGGCCTATTGCCGGACGGCAAACTCTACGGTTACAAGGAGGAGTACGATCGGCTGGTGTCGGCCTTG
CTGTACGATCCTCCCCGGCGGCCTGGTGGCAATGGCAATGGCGGCGGTCAAGTCGTGGCGGTCGTCGGCGACGGCGGCGT
TGGCAAGACTGCGCTTGCTCAGCACGCGCTGAGGCACGTGGACGTTCAAGCAAGGTTTGATCATGTGATCTGGGCGAGCG
TCCCACACAAGTACAGGAACAAGGACCTCTTGGCTGAGATCTGGATGTCCGGACCGGGTGCTACTGCTACTGCGGCTACA
CACAGGTGCGCCGACCAGATGAGCTTTGGTGCCCTTCAGGCGGAGTTCGTCAGGCTGGTGTCTCTGTCATCCCAGAGGTA
CCTGCTCGTCCTCGACGATGTCTGCAACGATGAGTCGGACGACGACGATCATCAGCGGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis