Browse Element(s) Details


Os.17971.1.S1_at

Description gb:AK073153.1
DB_XREF= gi:32983176
TID=Os.17971.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005K19, full insert sequence.
FL= gb:AK121833.1 gb:AK073153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0215011/11Eukaryotic initiation factor 3, gamma subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02120OsAffx.25837.1.S1_at11/114+684309..686831hypothetical protein
LOC_Os04g02130NANA4+694746..695321retrotransposon protein, putative, unclassified
LOC_Os04g02140NANA4+697336..702030transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g02150Os.17971.1.S1_at11/114+706325..712800Eukaryotic initiation factor 3, gamma subunit family protein, expressed
LOC_Os04g02160OsAffx.3699.1.S1_at11/114+713542..713973hypothetical protein
LOC_Os04g02180Os.47004.1.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.13882.2.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.24330.2.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified
LOC_Os04g02180OsAffx.25917.1.S1_at1/114+722868..727451retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006446biological_processregulation of translational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17971.1.S1_at--512--2831Chr04:707443..707467 (25 bp)
AAGTTTTGTTGCTGATCTGCTTCCC
LOC_Os04g02150
Os.17971.1.S1_at--216--9591Chr04:707417..707441 (25 bp)
TCTTGTCTTATTCAGCTCCATTTGC
LOC_Os04g02150
Os.17971.1.S1_at--1077--10271Chr04:707397..707421 (25 bp)
TTTGCTATCTATCACCAATACCTTC
LOC_Os04g02150
Os.17971.1.S1_at--823--9491Chr04:707279..707303 (25 bp)
TCTCGCAACATGCATGCACAGCTTG
LOC_Os04g02150
Os.17971.1.S1_at--1042--2931Chr04:707243..707267 (25 bp)
AATGGCTCTCGGATTACAAATTTCT
LOC_Os04g02150
Os.17971.1.S1_at--995--2171Chr04:707228..707252 (25 bp)
ACAAATTTCTGAACCCTGGCTTCGT
LOC_Os04g02150
Os.17971.1.S1_at--169--8471Chr04:707216..707236 (21 bp)
TGGCTTCGTGAATACCAGGTCCTTC
LOC_Os04g02150
Os.17971.1.S1_at--663--1851Chr04:706710..706734 (25 bp)
ACGAACTCATCCACACATGCAAATG
LOC_Os04g02150
Os.17971.1.S1_at--1142--5371Chr04:706624..706648 (25 bp)
GAAGCAAGTGAATGACCAAGCCCGT
LOC_Os04g02150
Os.17971.1.S1_at--702--9731Chr04:706600..706624 (25 bp)
TCAATGCGTGCTTCTATCCTTGGAA
LOC_Os04g02150
Os.17971.1.S1_at--665--7771Chr04:706566..706590 (25 bp)
GGTCACCATTTTACACGGTAACCTG
LOC_Os04g02150
Target Sequence 
AAGTTTTGTTGCTGATCTGCTTCCCCTCTTGTCTTATTCAGCTCCATTTGCTATCTATCACCAATACCTTCAGCCTCTCG
CAACATGCATGCACAGCTTGCAAGTATCAAAAATGGCTCTCGGATTACAAATTTCTGAACCCTGGCTTCGTGAATACCAG
GTCCTTCCATCACGAACTCATCCACACATGCAAATGAATGCATTTGGTGGTTATATTTTGAGTGGCATTAGGATACACAA
TGGCGATGCATGTAATGGAAGCAAGTGAATGACCAAGCCCGTCAATGCGTGCTTCTATCCTTGGAATTAAAATATGGTCA
CCATTTTACACGGTAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis