Browse Element(s) Details


OsAffx.25917.1.S1_at

Description tigr:9632.m00709
TID=OsAffx.25917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0796011/11hypothetical protein
LOC_Os01g290002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g189301/11hypothetical protein
LOC_Os11g231301/11retrotransposon protein, putative, unclassified
LOC_Os09g074301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g266601/11retrotransposon protein, putative, unclassified
LOC_Os11g321901/11hypothetical protein
LOC_Os06g193501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g021801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07890OsAffx.13717.1.S1_s_at11/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_at1/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_x_at1/114+4203785..4205725expressed protein
LOC_Os04g07900OsAffx.13718.1.S1_at11/114+4205992..4206228hypothetical protein
LOC_Os04g07910OsAffx.13719.1.S1_at10/114+4207986..4208875hypothetical protein
LOC_Os04g07920OsAffx.13720.1.S1_at11/114+4212894..4213983hypothetical protein
LOC_Os04g07920OsAffx.13703.1.S1_x_at1/114+4212894..4213983hypothetical protein
LOC_Os04g07930OsAffx.25916.1.S1_at11/114+4218371..4218922hypothetical protein
LOC_Os04g07944Os.47004.1.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07944OsAffx.24330.2.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07960OsAffx.25917.1.S1_at11/114+4226450..4226830hypothetical protein
LOC_Os04g07970OsAffx.25918.1.S1_at11/114+4230429..4231108hypothetical protein
LOC_Os04g07980Os.45976.1.S1_x_at5/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07980Os.45976.1.S1_at2/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07990Os.46306.1.S1_x_at4/114+4237922..4241014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08000OsAffx.25904.1.S1_at5/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.21754.1.S1_x_at2/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.9949.1.S1_at1/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25917.1.S1_at--1157--4096Chr11:12830985..12831009 (25 bp)
CGACAACGGGAGAGCTCGGTCTTTT
LOC_Os11g23130
OsAffx.25917.1.S1_at--1032--1979Chr09:3713871..3714108 (25 bp)
ACAACGGGAGAGCTCGGTCTTTTGA
LOC_Os09g07430
OsAffx.25917.1.S1_at--349--9352Chr06:11009584..11009603 (20 bp)
TCGCTGAGCGCTATGTGGGTACCCT
LOC_Os06g19350
OsAffx.25917.1.S1_at--994--3291Chr04:4226615..4226639 (25 bp)
CACAAATATGTCTCACCCACTGCTA
LOC_Os04g07960
OsAffx.25917.1.S1_at--767--2251Chr04:4226618..4226642 (25 bp)
AAATATGTCTCACCCACTGCTAATC
LOC_Os04g07960
OsAffx.25917.1.S1_at--125--1991Chr04:4226633..4226657 (25 bp)
ACTGCTAATCCATCCACTCTGAAGG
LOC_Os04g07960
OsAffx.25917.1.S1_at--1032--4831Chr04:4226636..4226660 (25 bp)
GCTAATCCATCCACTCTGAAGGAAG
LOC_Os04g07960
OsAffx.25917.1.S1_at--153--3531Chr04:4226643..4226667 (25 bp)
CATCCACTCTGAAGGAAGAGCGGTT
LOC_Os04g07960
OsAffx.25917.1.S1_at--839--2911Chr04:4226654..4226678 (25 bp)
AAGGAAGAGCGGTTCCGTATCACAG
LOC_Os04g07960
OsAffx.25917.1.S1_at--289--5871Chr04:4226660..4226684 (25 bp)
GAGCGGTTCCGTATCACAGGAGTGC
LOC_Os04g07960
OsAffx.25917.1.S1_at--884--10651Chr04:4226666..4226690 (25 bp)
TTCCGTATCACAGGAGTGCGAACTC
LOC_Os04g07960
Target Sequence 
CGACAACGGGAGAGCTCGGTCTTTTGAAGGCGCGACGCCTTTTTCAAGACGATGAGAAGGCCGCTCCGCCTCTCGCTGAG
CGCTATGTGGGTACCCTGTTCACCAAGGCAGGGGATGAAGTGCTCCACAAATATGTCTCACCCACTGCTAATCCATCCAC
TCTGAAGGAAGAGCGGTTCCGTATCACAGGAGTGCGAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis