Browse Element(s) Details


OsAffx.13720.1.S1_at

Description tigr:9632.m00705
TID=OsAffx.13720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0792011/11hypothetical protein
LOC_Os04g071701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07880OsAffx.13716.1.S1_at11/114+4188524..4189768hypothetical protein
LOC_Os04g07890OsAffx.13717.1.S1_s_at11/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_at1/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_x_at1/114+4203785..4205725expressed protein
LOC_Os04g07900OsAffx.13718.1.S1_at11/114+4205992..4206228hypothetical protein
LOC_Os04g07910OsAffx.13719.1.S1_at10/114+4207986..4208875hypothetical protein
LOC_Os04g07920OsAffx.13720.1.S1_at11/114+4212894..4213983hypothetical protein
LOC_Os04g07920OsAffx.13703.1.S1_x_at1/114+4212894..4213983hypothetical protein
LOC_Os04g07930OsAffx.25916.1.S1_at11/114+4218371..4218922hypothetical protein
LOC_Os04g07944Os.47004.1.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07944OsAffx.24330.2.S1_at1/114+4221459..4225524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07960OsAffx.25917.1.S1_at11/114+4226450..4226830hypothetical protein
LOC_Os04g07970OsAffx.25918.1.S1_at11/114+4230429..4231108hypothetical protein
LOC_Os04g07980Os.45976.1.S1_x_at5/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07980Os.45976.1.S1_at2/114+4232001..4235694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07990Os.46306.1.S1_x_at4/114+4237922..4241014transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13720.1.S1_at--509--8231Chr04:4213401..4213425 (25 bp)
GGCAAGCATGCAGTTAATGAACGCT
LOC_Os04g07920
OsAffx.13720.1.S1_at--1162--4591Chr04:4213489..4213513 (25 bp)
GCGAGGAAGGCAATTTTAATGATCA
LOC_Os04g07920
OsAffx.13720.1.S1_at--799--171Chr04:4213501..4213525 (25 bp)
ATTTTAATGATCATGAATGCTGCTG
LOC_Os04g07920
OsAffx.13720.1.S1_at--1112--1531Chr04:4213620..4213644 (25 bp)
AGCATCATTGGAGTCTAGGCTCGAG
LOC_Os04g07920
OsAffx.13720.1.S1_at--878--10092Chr04:4213635..4213659 (25 bp)
TAGGCTCGAGGCAGCTCTAGTGAAG
LOC_Os04g07920
OsAffx.13720.1.S1_at--1149--3471Chr04:4213663..4213687 (25 bp)
CAGGAATTGGAGTCTACTTCTGTTA
LOC_Os04g07920
OsAffx.13720.1.S1_at--559--3731Chr04:4213676..4213700 (25 bp)
CTACTTCTGTTAAGGCGTTGATTGA
LOC_Os04g07920
OsAffx.13720.1.S1_at--781--5511Chr04:4213699..4213723 (25 bp)
GAAAATGATATGCTTTGGTCGGTCA
LOC_Os04g07920
OsAffx.13720.1.S1_at--322--9071Chr04:4213709..4213733 (25 bp)
TGCTTTGGTCGGTCATTGAGAGGCT
LOC_Os04g07920
OsAffx.13720.1.S1_at--96--4771Chr04:4213768..4213792 (25 bp)
GCTGCAAAGGCATCTGATTCTGAAA
LOC_Os04g07920
OsAffx.13720.1.S1_at--879--8011Chr04:4213836..4213860 (25 bp)
GGAGGAAATTCAGACCAACAAGAAT
LOC_Os04g07920
Target Sequence 
GGCAAGCATGCAGTTAATGAACGCTGCTGATACGTACCAAGAAGTAACAAGGAAGCAAATTAAGGCAAAGGAGGATGACC
TGGAGGATGCGAGGAAGGCAATTTTAATGATCATGAATGCTGCTGATACATATCAACAAGTAGCAGAGAAGAAAATTAAG
GATAAGGTGGAGGAATTGAGGGTTCTTGGGGTTCAAAAGGCAGAGATAGATGCAAGGATAGCATCATTGGAGTCTAGGCT
CGAGGCAGCTCTAGTGAAGAATCAGGAATTGGAGTCTACTTCTGTTAAGGCGTTGATTGAAAATGATATGCTTTGGTCGG
TCATTGAGAGGCTCATGATGGGCGGACTAGTTGAGGTGAAAGAGGCAGCTGCAAAGGCATCTGATTCTGAAAAAGTAGAA
ATCATGAAGGAATTAGAAGACCATAACATGAAGGTGGAGGAAATTCAGACCAACAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis