Browse Element(s) Details


OsAffx.13716.1.S1_at

Description tigr:9632.m00701
TID=OsAffx.13716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0788011/11hypothetical protein
LOC_Os03g151401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07850OsAffx.25915.1.S1_at11/114+4165619..4165978hypothetical protein
LOC_Os04g07860OsAffx.31869.5.S1_x_at5/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.2.S1_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.3.S1_x_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07870NANA4+4180264..4181938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07880OsAffx.13716.1.S1_at11/114+4188524..4189768hypothetical protein
LOC_Os04g07890OsAffx.13717.1.S1_s_at11/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_at1/114+4203785..4205725expressed protein
LOC_Os04g07890OsAffx.25907.2.S1_x_at1/114+4203785..4205725expressed protein
LOC_Os04g07900OsAffx.13718.1.S1_at11/114+4205992..4206228hypothetical protein
LOC_Os04g07910OsAffx.13719.1.S1_at10/114+4207986..4208875hypothetical protein
LOC_Os04g07920OsAffx.13720.1.S1_at11/114+4212894..4213983hypothetical protein
LOC_Os04g07920OsAffx.13703.1.S1_x_at1/114+4212894..4213983hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13716.1.S1_at--480--7851Chr04:4189210..4189234 (25 bp)
GGTTTGCATAGGTATTGACATTCCA
LOC_Os04g07880
OsAffx.13716.1.S1_at--591--5671Chr04:4189179..4189203 (25 bp)
GACATTGAGTTCACGTCGCATCAAA
LOC_Os04g07880
OsAffx.13716.1.S1_at--427--9691Chr04:4189159..4189183 (25 bp)
TCAAAAGCTACTCATCTACCGCAAT
LOC_Os04g07880
OsAffx.13716.1.S1_at--1136--9951Chr04:4189143..4189167 (25 bp)
TACCGCAATGCACAAGTCGCAAGTG
LOC_Os04g07880
OsAffx.13716.1.S1_at--461--2871Chr04:4189123..4189147 (25 bp)
AAGTGTGATCCTCGATTCCTTGAGC
LOC_Os04g07880
OsAffx.13716.1.S1_at--158--91Chr04:4189109..4189133 (25 bp)
ATTCCTTGAGCCTGGAGGAGTTCAA
LOC_Os04g07880
OsAffx.13716.1.S1_at--399--1192Chr05:24005426..24005845 (25 bp)
AGATTTGGGCCACACTTCAAGTTGC
NONE
OsAffx.13716.1.S1_at--1157--1431Chr04:4188696..4188720 (25 bp)
AGAACGCCACTATAGCCAAGAACAA
LOC_Os04g07880
OsAffx.13716.1.S1_at--745--7731Chr04:4188668..4188692 (25 bp)
GGTGGTTTTCAAGGCAAAGCTGCAA
LOC_Os04g07880
OsAffx.13716.1.S1_at--426--671Chr04:4188618..4188642 (25 bp)
ATGAAGACCTTGCTCTCATCGTCAA
LOC_Os04g07880
OsAffx.13716.1.S1_at--920--9612Chr03:8248466..8248485 (20 bp)
TCATCGTCAAGAGGTTCAAGCACTT
LOC_Os03g15140
Target Sequence 
GGTTTGCATAGGTATTGACATTCCAAAGGATGACATTGAGTTCACGTCGCATCAAAAGCTACTCATCTACCGCAATGCAC
AAGTCGCAAGTGTGATCCTCGATTCCTTGAGCCTGGAGGAGTTCAACAAGGTGGACCAACTTGAAGAAGCCAAGGAGATT
TGGGCCACACTTCAAGTTGCTCATGAAGGAGCACCTGAGGAAGAAGCCAAGGAAGTTAAGGAGATCGCCAAGAACGCCAC
TATAGCCAAGAACAAGGAGGTGGTTTTCAAGGCAAAGCTGCAAGCATCTAGTGAAAACGAGAGTGAAGATGAAGACCTTG
CTCTCATCGTCAAGAGGTTCAAGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis