Browse Element(s) Details


OsAffx.25915.1.S1_at

Description tigr:9632.m00698
TID=OsAffx.25915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0785011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07770NANA4+4143344..4148606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07789NANA4+4149290..4150938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07808NANA4+4152505..4153497hypothetical protein
LOC_Os04g07830OsAffx.25914.1.S1_at11/114+4156751..4157971hypothetical protein
LOC_Os04g07830OsAffx.13703.1.S1_x_at1/114+4156751..4157971hypothetical protein
LOC_Os04g07840OsAffx.26082.3.S1_at4/114+4160040..4161020retrotransposon protein, putative, unclassified
LOC_Os04g07840OsAffx.16960.1.S1_at1/114+4160040..4161020retrotransposon protein, putative, unclassified
LOC_Os04g07850OsAffx.25915.1.S1_at11/114+4165619..4165978hypothetical protein
LOC_Os04g07860OsAffx.31869.5.S1_x_at5/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.2.S1_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.3.S1_x_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07870NANA4+4180264..4181938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07880OsAffx.13716.1.S1_at11/114+4188524..4189768hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25915.1.S1_at--461--6231Chr04:4165652..4165676 (25 bp)
GATGGAATCCCATGGACGGAATCCT
LOC_Os04g07850
OsAffx.25915.1.S1_at--544--3031Chr04:4165671..4165695 (25 bp)
AATCCTGGGTCCAAGGAGACCGGCG
LOC_Os04g07850
OsAffx.25915.1.S1_at--22--6411Chr04:4165702..4165726 (25 bp)
GATCGTGAAGGTAGCGCTCGCGCGG
LOC_Os04g07850
OsAffx.25915.1.S1_at--798--9331Chr04:4165719..4165743 (25 bp)
TCGCGCGGGTCAGCCTAACCATGTG
LOC_Os04g07850
OsAffx.25915.1.S1_at--297--7111Chr04:4165727..4165751 (25 bp)
GTCAGCCTAACCATGTGCGGCGGCT
LOC_Os04g07850
OsAffx.25915.1.S1_at--480--8611Chr04:4165813..4165837 (25 bp)
TGGTGGGCTGCCTCGAGATGGTGAA
LOC_Os04g07850
OsAffx.25915.1.S1_at--418--31Chr04:4165870..4165894 (25 bp)
ATTGGTCTGGGTCGCACAGCGTCAA
LOC_Os04g07850
OsAffx.25915.1.S1_at--882--3291Chr04:4165884..4165908 (25 bp)
CACAGCGTCAAGTGCACCCAAGATT
LOC_Os04g07850
OsAffx.25915.1.S1_at--903--2851Chr04:4165893..4165917 (25 bp)
AAGTGCACCCAAGATTCTCATCCGT
LOC_Os04g07850
OsAffx.25915.1.S1_at--617--1251Chr04:4165904..4165928 (25 bp)
AGATTCTCATCCGTGTGTCTTGGCC
LOC_Os04g07850
OsAffx.25915.1.S1_at--996--551Chr04:4165912..4165936 (25 bp)
ATCCGTGTGTCTTGGCCAGTGCAGG
LOC_Os04g07850
Target Sequence 
GATGGAATCCCATGGACGGAATCCTGGGTCCAAGGAGACCGGCGGCGGGCGATCGTGAAGGTAGCGCTCGCGCGGGTCAG
CCTAACCATGTGCGGCGGCTGCCGTGGGACAGGGAAAAGGTGTTTTGGCGACGGAGGAGAGCGGCGGGATGGAGGTGCTG
ATGGTGGGCTGCCTCGAGATGGTGAAGTGGATGCGGTGGCGGCCGATGTTGAGGGCGCATTGGTCTGGGTCGCACAGCGT
CAAGTGCACCCAAGATTCTCATCCGTGTGTCTTGGCCAGTGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis