Browse Element(s) Details


OsAffx.25914.1.S1_at

Description tigr:9632.m00696
TID=OsAffx.25914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07810OsAffx.15648.1.S1_at1/114+4130507..4132112hypothetical protein
LOC_Os04g07800NANA4+4132509..4132961hypothetical protein
LOC_Os04g07790NANA4+4135918..4137802retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07780NANA4+4138339..4139851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07770NANA4+4143344..4148606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07789NANA4+4149290..4150938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07808NANA4+4152505..4153497hypothetical protein
LOC_Os04g07830OsAffx.25914.1.S1_at11/114+4156751..4157971hypothetical protein
LOC_Os04g07830OsAffx.13703.1.S1_x_at1/114+4156751..4157971hypothetical protein
LOC_Os04g07840OsAffx.26082.3.S1_at4/114+4160040..4161020retrotransposon protein, putative, unclassified
LOC_Os04g07840OsAffx.16960.1.S1_at1/114+4160040..4161020retrotransposon protein, putative, unclassified
LOC_Os04g07850OsAffx.25915.1.S1_at11/114+4165619..4165978hypothetical protein
LOC_Os04g07860OsAffx.31869.5.S1_x_at5/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.2.S1_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07860OsAffx.31869.3.S1_x_at1/114+4170696..4171598retrotransposon protein, putative, unclassified
LOC_Os04g07870NANA4+4180264..4181938transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25914.1.S1_at--104--6351Chr04:4157323..4157347 (25 bp)
GATGCTGCAGATACATACCAACAAG
LOC_Os04g07830
OsAffx.25914.1.S1_at--55--451Chr04:4157216..4157240 (25 bp)
ATCTTTGGAGTCTGAGCTAGAGGCA
LOC_Os04g07830
OsAffx.25914.1.S1_at--117--6491Chr04:4157134..4157158 (25 bp)
GATAGGCTTTGGTCACGGATGGAAT
LOC_Os04g07830
OsAffx.25914.1.S1_at--278--8631Chr04:4157109..4157133 (25 bp)
TGGTGGAGGCAAAAGAGACATCTAC
LOC_Os04g07830
OsAffx.25914.1.S1_at--397--1351Chr04:4157096..4157120 (25 bp)
AGAGACATCTACAAATGCATTTGAT
LOC_Os04g07830
OsAffx.25914.1.S1_at--219--6571Chr04:4156973..4156997 (25 bp)
GATTCAGTTGGAGGTTTTGACTGCA
LOC_Os04g07830
OsAffx.25914.1.S1_at--1000--7691Chr04:4156920..4156944 (25 bp)
GGGTCGAGAGGCTTAAAATGGAATT
LOC_Os04g07830
OsAffx.25914.1.S1_at--334--231Chr04:4156893..4156917 (25 bp)
ATGTGTTGGTCGAGGCAAAAAAGGC
LOC_Os04g07830
OsAffx.25914.1.S1_at--613--551Chr04:4156865..4156889 (25 bp)
ATCCAGAAGCAATCAGGAGACCTTA
LOC_Os04g07830
OsAffx.25914.1.S1_at--686--9231Chr04:4156821..4156845 (25 bp)
TCCAGGCTGCCATGGATTTCGTGAA
LOC_Os04g07830
OsAffx.25914.1.S1_at--972--7931Chr04:4156808..4156832 (25 bp)
GGATTTCGTGAAGCGTGACAATGAT
LOC_Os04g07830
Target Sequence 
GATGCTGCAGATACATACCAACAAGTAGCAGAGAAGCAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTTCA
CAAGGCAGAGATGGATGCAAGGGCAGCATCTTTGGAGTCTGAGCTAGAGGCAGCTCTAGCGAAGAATCAGGAATTGGAGG
CTTATTATAGTAAGGTTCTAATTGAAAATGATAGGCTTTGGTCACGGATGGAATTGGTGGAGGCAAAAGAGACATCTACA
AATGCATTTGATTCTGACGAGGCAGAAATCATGAAAGAATTGGAAGACCATAAGATGAAGGTGGAGGAAAATCATAGCAG
CAAGGATTTGAGAAAGGGTGAAAATGATAAGATTCAGTTGGAGGTTTTGACTGCAGAGCAGAAAAATAGCATGTTTGAAG
CAGGGGTCGAGAGGCTTAAAATGGAATTAGATGTGTTGGTCGAGGCAAAAAAGGCAAAATCCAGAAGCAATCAGGAGACC
TTAAGGGGGGAAGTGAAGGAAATCCAGGCTGCCATGGATTTCGTGAAGCGTGACAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis