Browse Element(s) Details


OsAffx.16960.1.S1_at

Description tigr:9636.m01242
TID=OsAffx.16960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1266010/11hypothetical protein
LOC_Os04g486503/11retrotransposon protein, putative, unclassified
LOC_Os04g184501/11retrotransposon protein, putative, unclassified
LOC_Os04g078401/11retrotransposon protein, putative, unclassified
LOC_Os01g384001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12620Os.48015.1.A1_x_at1/118+7458351..7458743retrotransposon protein, putative, unclassified
LOC_Os08g12630OsAffx.5794.1.S1_at10/118+7464383..7465418hypothetical protein
LOC_Os08g12640NANA8+7469281..7472083hypothetical protein
LOC_Os08g12650OsAffx.22699.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.20615.1.S1_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.8201.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12660OsAffx.16960.1.S1_at10/118+7479598..7480571hypothetical protein
LOC_Os08g12660OsAffx.29667.1.S1_at1/118+7479598..7480571hypothetical protein
LOC_Os08g12670OsAffx.16961.1.S1_at11/118+7481445..7481831hypothetical protein
LOC_Os08g12680OsAffx.5795.1.S1_at11/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os08g12680Os.56070.1.S1_x_at1/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16960.1.S1_at--213--3751NONE
CTCAAGTTCATGGAACAGCCGATGT
NONE
OsAffx.16960.1.S1_at--543--1675Chr12:9338726..9338750 (25 bp)
AGCCGATGTTATGGTTTGAGCCTAA
NONE
OsAffx.16960.1.S1_at--934--6854Chr08:7480411..7480435 (25 bp)
GTTTGAGCCTAAGTGATGAGCAACT
LOC_Os08g12660
OsAffx.16960.1.S1_at--406--6311Chr08:7480425..7480449 (25 bp)
GATGAGCAACTAGCCGATCTCGCCT
LOC_Os08g12660
OsAffx.16960.1.S1_at--274--4451Chr08:7480446..7480470 (25 bp)
GCCTTCCAAGGATTGTCAGCAGCTA
LOC_Os08g12660
OsAffx.16960.1.S1_at--1121--7891Chr08:7480455..7480479 (25 bp)
GGATTGTCAGCAGCTATCAGAGAGA
LOC_Os08g12660
OsAffx.16960.1.S1_at--793--1259Chr08:7480479..7480503 (25 bp)
AGATTCTTTTGCCACGAGTTTGACA
LOC_Os08g12660
OsAffx.16960.1.S1_at--693--10691Chr08:7480487..7480511 (25 bp)
TTGCCACGAGTTTGACAACCATGCT
LOC_Os08g12660
OsAffx.16960.1.S1_at--712--6071Chr08:7480494..7480518 (25 bp)
GAGTTTGACAACCATGCTCATCTAA
LOC_Os08g12660
OsAffx.16960.1.S1_at--919--5611Chr08:7480500..7480524 (25 bp)
GACAACCATGCTCATCTAATGCAAA
LOC_Os08g12660
OsAffx.16960.1.S1_at--602--3011Chr08:7480517..7480541 (25 bp)
AATGCAAATAGTATCAGCTCATGAA
LOC_Os08g12660
Target Sequence 
CTCAAGTTCATGGAACAGCCGATGTTATGGTTTGAGCCTAAGTGATGAGCAACTAGCCGATCTCGCCTTCCAAGGATTGT
CAGCAGCTATCAGAGAGAGATTCTTTTGCCACGAGTTTGACAACCATGCTCATCTAATGCAAATAGTATCAGCTCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis