Browse Element(s) Details


OsAffx.5795.1.S1_at

Description tigr:9636.m01244
TID=OsAffx.5795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zinc finger domain, LSD1 subclass, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1268011/11zinc finger domain, LSD1 subclass family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12620Os.48015.1.A1_x_at1/118+7458351..7458743retrotransposon protein, putative, unclassified
LOC_Os08g12630OsAffx.5794.1.S1_at10/118+7464383..7465418hypothetical protein
LOC_Os08g12640NANA8+7469281..7472083hypothetical protein
LOC_Os08g12650OsAffx.22699.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.20615.1.S1_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12650OsAffx.8201.1.S1_x_at1/118+7473156..7475802retrotransposon protein, putative, unclassified
LOC_Os08g12660OsAffx.16960.1.S1_at10/118+7479598..7480571hypothetical protein
LOC_Os08g12660OsAffx.29667.1.S1_at1/118+7479598..7480571hypothetical protein
LOC_Os08g12670OsAffx.16961.1.S1_at11/118+7481445..7481831hypothetical protein
LOC_Os08g12680OsAffx.5795.1.S1_at11/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os08g12680Os.56070.1.S1_x_at1/118+7482311..7504175zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os08g12690NANA8+7515308..7516878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12700NANA8+7519083..7525264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12710NANA8+7526782..7528913retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5795.1.S1_at--593--10831Chr08:7503205..7503229 (25 bp)
TTGGGTGGTCTAATACTTCCTGTCT
LOC_Os08g12680
OsAffx.5795.1.S1_at--998--311Chr08:7503366..7503390 (25 bp)
ATACGTGTCGCTCGCTTGGAGACAA
LOC_Os08g12680
OsAffx.5795.1.S1_at--141--7951Chr08:7503804..7503828 (25 bp)
GGATATTGACGATTGACTGACTTGA
LOC_Os08g12680
OsAffx.5795.1.S1_at--1152--3051Chr08:7503865..7503889 (25 bp)
AATCTTTTTTGCTGGTGACTAGTCA
LOC_Os08g12680
OsAffx.5795.1.S1_at--558--8911Chr08:7503912..7503936 (25 bp)
TGAGCTCGAGAGGTGCATCTTTCCC
LOC_Os08g12680
OsAffx.5795.1.S1_at--684--7651Chr08:7503948..7503972 (25 bp)
GGGAGGCACAAAGCGTAGCAGTTTC
LOC_Os08g12680
OsAffx.5795.1.S1_at--204--1531Chr08:7503964..7503988 (25 bp)
AGCAGTTTCTGTTGGTCGCTACCCA
LOC_Os08g12680
OsAffx.5795.1.S1_at--67--7231Chr08:7503978..7504002 (25 bp)
GTCGCTACCCAATTAATTCTCCATT
LOC_Os08g12680
OsAffx.5795.1.S1_at--46--10591Chr08:7503994..7504018 (25 bp)
TTCTCCATTGTTTCTTTACCTTTTG
LOC_Os08g12680
OsAffx.5795.1.S1_at--278--1071Chr08:7504036..7504060 (25 bp)
AGGGATGTGCGGTGTTTTCGTTCTC
LOC_Os08g12680
OsAffx.5795.1.S1_at--47--291Chr08:7504077..7504101 (25 bp)
ATAGGTACGCTGTCTATCGTGTATA
LOC_Os08g12680
Target Sequence 
TTGGGTGGTCTAATACTTCCTGTCTGGGGCATAGTAGAAAAGGCCCTAGCTAAGCAGGTTCGACAAATTCACAAGAGGAT
ACGTGTCGCTCGCTTGGAGACAAATGATAATGAGCGGATTGTTGGACTTATGATTCCAAATTCAGCTGTGGAATCAGTAT
TAGAAGGTCTGCAATGGGTGCAGGATATTGACGATTGACTGACTTGAGACAAGTTAATTCATTGCACATTCTTTTTTTTT
TTTAATCTTTTTTGCTGGTGACTAGTCATTTGTAAAGGTGAGGAGGCAGTTGAGCTCGAGAGGTGCATCTTTCCCTCTGA
ATCTGAGGGAGGCACAAAGCGTAGCAGTTTCTGTTGGTCGCTACCCAATTAATTCTCCATTGTTTCTTTACCTTTTGTTT
TGCTTGTTCAGTATAGGGATGTGCGGTGTTTTCGTTCTCGGCCTCAGAAATAATTATAGGTACGCTGTCTATCGTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis