Browse Element(s) Details


OsAffx.29667.1.S1_at

Description tigr:9636.m04604
TID=OsAffx.29667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4512011/11hypothetical protein
LOC_Os05g177701/11transposon protein, putative, unclassified
LOC_Os08g223701/11hypothetical protein
LOC_Os06g274001/11hypothetical protein
LOC_Os08g126601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45080Os.11811.1.S1_at11/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.17451.1.S1_at4/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.532.1.S1_x_at1/118+28162231..28172498expressed protein
LOC_Os08g45090NANA8+28178412..28178981hypothetical protein
LOC_Os08g45100NANA8+28183871..28184798hypothetical protein
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29667.1.S1_at--879--3291Chr08:28194747..28194771 (25 bp)
CACATCCGGGAACACGCATGGTCGC
LOC_Os08g45120
OsAffx.29667.1.S1_at--316--3991Chr08:28194753..28194777 (25 bp)
CGGGAACACGCATGGTCGCCGGCAT
LOC_Os08g45120
OsAffx.29667.1.S1_at--109--3551Chr08:28194775..28194799 (25 bp)
CATCGCAGCCTGTTAGCCACCGGAG
LOC_Os08g45120
OsAffx.29667.1.S1_at--551--10231Chr08:28196657..28196680 (24 bp)
TTTGGCGCGTCATGGATTACAGGTT
LOC_Os08g45120
OsAffx.29667.1.S1_at--380--4151Chr08:28196662..28196837 (25 bp)
CGCGTCATGGATTACAGGTTTTCTA
LOC_Os08g45120
OsAffx.29667.1.S1_at--200--10391Chr08:28196831..28196852 (22 bp)
TTTTCTACTTTGCTTTCTGCAGCTT
LOC_Os08g45120
OsAffx.29667.1.S1_at--962--90730Chr12:22994195..22994280 (25 bp)
TGCTTTCTGCAGCTTGCTGAGTACG
NONE
OsAffx.29667.1.S1_at--282--10511Chr08:28196944..28196968 (25 bp)
TTCAACCCTCTTTTTCAGACTCAAT
LOC_Os08g45120
OsAffx.29667.1.S1_at--721--1791Chr08:28196948..28196972 (25 bp)
ACCCTCTTTTTCAGACTCAATTTGG
LOC_Os08g45120
OsAffx.29667.1.S1_at--248--6871Chr08:28196974..28196998 (25 bp)
GTTTGTGCAGAAGCTAGGAGTTCAT
LOC_Os08g45120
OsAffx.29667.1.S1_at--790--5031Chr08:28196980..28197004 (25 bp)
GCAGAAGCTAGGAGTTCATTTATAT
LOC_Os08g45120
Target Sequence 
CACATCCGGGAACACGCATGGTCGCCGGCATCGCAGCCTGTTAGCCACCGGAGCGCCGCCGCCCCAACCGCCTCCTCCTC
TCCCTTCTATCGGCTGGAGGAAGAAGAAGACGAGAAGAAGGAGAGAGAAAGAGAAAAGAAGAAGAAGGAAAAAGAAAAGG
AAAGAAAGGCTGACAGGAGGCAAACTTATGCCGAGCAGGGCAATATTGTGATATTTACCGAGGCGCAGGTACCACTGATG
TTAGTAACCGAAAAGCTTTGCCATGACAAGGCTAATGTGTTTGGCGCGTCATGGATTACAGGTTTTCTACTTTGCTTTCT
GCAGCTTGCTGAGTACGTTGTACTCACCCTTGCTTCAACCCTCTTTTTCAGACTCAATTTGGAGTTTGTGCAGAAGCTAG
GAGTTCATTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis