Browse Element(s) Details


Os.54792.1.S1_at

Description gb:AK106778.1
DB_XREF= gi:32991987
TID=Os.54792.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H02, full insert sequence.
FL= gb:AK106778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4515011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54792.1.S1_at--1043--4011Chr08:28214591..28214615 (25 bp)
CGTCAACGCCTACAGGATGCACATG
LOC_Os08g45150
Os.54792.1.S1_at--924--991Chr08:28214604..28214628 (25 bp)
AGGATGCACATGGACTTCATCTCCG
LOC_Os08g45150
Os.54792.1.S1_at--381--4071Chr08:28214771..28214795 (25 bp)
CGAGAGGGCCAACCGCATCATCGTC
LOC_Os08g45150
Os.54792.1.S1_at--570--511Chr08:28214790..28214814 (25 bp)
ATCGTCAGCCAGTTCATGTCAGCCT
LOC_Os08g45150
Os.54792.1.S1_at--1001--5851Chr08:28214922..28214946 (25 bp)
GACCAACCTCGCTATATATATCTCT
LOC_Os08g45150
Os.54792.1.S1_at--428--231Chr08:28214955..28214979 (25 bp)
ATATATGCCGCCTATACTATAATTA
LOC_Os08g45150
Os.54792.1.S1_at--414--10771Chr08:28215005..28215029 (25 bp)
TTGATAATGTAATTCTCCCAAGCAA
LOC_Os08g45150
Os.54792.1.S1_at--505--71Chr08:28215078..28215102 (25 bp)
ATTGCGTACGTGCAAATCGTTATAC
LOC_Os08g45150
Os.54792.1.S1_at--277--2991Chr08:28215113..28215137 (25 bp)
AATGTTATGTTTGCCTGTAAGGTTC
LOC_Os08g45150
Os.54792.1.S1_at--1057--4471Chr08:28215125..28215149 (25 bp)
GCCTGTAAGGTTCAATCATCCCTGA
LOC_Os08g45150
Os.54792.1.S1_at--921--411Chr08:28215139..28215163 (25 bp)
ATCATCCCTGAACATGCAGGCTCTA
LOC_Os08g45150
Target Sequence 
CGTCAACGCCTACAGGATGCACATGGACTTCATCTCCGACCCGGCGGCGTACGGCTTCGCCACCTCCAAGGTGGCGTGCT
GGGGGCAGGGCCCCTACAACGGCGTCGGCCTCTGCACCGCGCTCTCCACCCTCTGCCCCGACCGCTCCCTCTACGTCTTC
TGGGACAACTTCCACCCCACCGAGAGGGCCAACCGCATCATCGTCAGCCAGTTCATGTCAGCCTCGCCCGACTACATGCA
CCCCTTCAACCTCTCTACCATCCTCGCCATGGACGCCGCCACTGCTGCTGCTGCGCCATGAACGCCCGCCATCATCCGGC
CCATACATATCGACCAACCTCGCTATATATATCTCTAATTTTATATATATGCCGCCTATACTATAATTAACTACGCTATA
TATAGCTAGTATAATTGATAATGTAATTCTCCCAAGCAATGCAATATACATATGTATGCATGCAAATAAAGATCGAGGGA
TATATATATTGCGTACGTGCAAATCGTTATACATATGAGAATAATGTTATGTTTGCCTGTAAGGTTCAATCATCCCTGAA
CATGCAGGCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis