Browse Element(s) Details


Os.30907.1.S1_at

Description gb:AY339375.1
DB_XREF= gi:33440017
TID=Os.30907.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30907 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
PROD=Ap22
FL= gb:AY339375.1 gb:AK108143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4511011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45080Os.11811.1.S1_at11/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.17451.1.S1_at4/118+28162231..28172498expressed protein
LOC_Os08g45080OsAffx.532.1.S1_x_at1/118+28162231..28172498expressed protein
LOC_Os08g45090NANA8+28178412..28178981hypothetical protein
LOC_Os08g45100NANA8+28183871..28184798hypothetical protein
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30907.1.S1_at--460--2591Chr08:28189067..28189091 (25 bp)
AACGACGACTCCAACAACTCGTCTT
LOC_Os08g45110
Os.30907.1.S1_at--358--1611Chr08:28189024..28189048 (25 bp)
AGCTGACGACGATGCTGCAGCTGGA
LOC_Os08g45110
Os.30907.1.S1_at--972--4011Chr08:28188976..28189000 (25 bp)
CGTCGTCGTCAGATCAAGAGGACTT
LOC_Os08g45110
Os.30907.1.S1_at--425--2711Chr08:28188961..28188985 (25 bp)
AAGAGGACTTCGAGACGTACGTCAC
LOC_Os08g45110
Os.30907.1.S1_at--355--8111Chr08:28188957..28188981 (25 bp)
GGACTTCGAGACGTACGTCACGCGG
LOC_Os08g45110
Os.30907.1.S1_at--736--5991Chr08:28188950..28188974 (25 bp)
GAGACGTACGTCACGCGGCTACCCA
LOC_Os08g45110
Os.30907.1.S1_at--318--4691Chr08:28188936..28188960 (25 bp)
GCGGCTACCCAAGGCGGAGGACTTT
LOC_Os08g45110
Os.30907.1.S1_at--709--1811Chr08:28188931..28188955 (25 bp)
TACCCAAGGCGGAGGACTTTGGGCT
LOC_Os08g45110
Os.30907.1.S1_at--851--791Chr08:28188895..28188919 (25 bp)
AGGAGGTTCCACTCGACGTCCTCGA
LOC_Os08g45110
Os.30907.1.S1_at--665--4671Chr08:28188862..28188886 (25 bp)
GCGGTGGCATCAGCATCTGGGACCT
LOC_Os08g45110
Os.30907.1.S1_at--1041--9651Chr08:28188853..28188877 (25 bp)
TCAGCATCTGGGACCTCTCCATCTG
LOC_Os08g45110
Target Sequence 
AACGACGACTCCAACAACTCGTCTTCCACGACGCATCAGCAGCAGCTGACGACGATGCTGCAGCTGGACGACGACAACTA
CACGCTGCAGCCGTCGTCGTCAGATCAAGAGGACTTCGAGACGTACGTCACGCGGCTACCCAAGGCGGAGGACTTTGGGC
TGGAGGGCTTCCAGGAGGTTCCACTCGACGTCCTCGACGAAGCCGGCGGTGGCATCAGCATCTGGGACCTCTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis