Browse Element(s) Details


Os.11943.1.S1_at

Description gb:AK062820.1
DB_XREF= gi:32972838
TID=Os.11943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F01, full insert sequence.
FL= gb:AK062820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4514010/11Glutaredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45110Os.30907.1.S1_at11/118+28188374..28189551AP2 domain containing protein, expressed
LOC_Os08g45120OsAffx.29667.1.S1_at11/118+28194699..28197040hypothetical protein
LOC_Os08g45120Os.38992.1.A1_x_at1/118+28194699..28197040hypothetical protein
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11943.1.S1_at--573--7931Chr08:28210719..28210743 (25 bp)
GGATTCCTCCTTCGGCTCGCGGATG
LOC_Os08g45140
Os.11943.1.S1_at--346--7311NONE
GTGCTCCTACTCCAGCCGCACGTCA
NONE
Os.11943.1.S1_at--1070--2531Chr08:28211285..28211579 (25 bp)
AACTCGGCGCACAGGGACCTCAGTT
LOC_Os08g45140
Os.11943.1.S1_at--785--9451Chr08:28211560..28211582 (23 bp)
TCGGCGCACAGGGACCTCAGTTGCA
LOC_Os08g45140
Os.11943.1.S1_at--996--8371Chr08:28211560..28211584 (25 bp)
GGCGCACAGGGACCTCAGTTGCAAA
LOC_Os08g45140
Os.11943.1.S1_at--470--4591Chr08:28211561..28211585 (25 bp)
GCGCACAGGGACCTCAGTTGCAAAA
LOC_Os08g45140
Os.11943.1.S1_at--781--5091Chr08:28211563..28211587 (25 bp)
GCACAGGGACCTCAGTTGCAAAAGG
LOC_Os08g45140
Os.11943.1.S1_at--946--3451Chr08:28211566..28211590 (25 bp)
CAGGGACCTCAGTTGCAAAAGGTGT
LOC_Os08g45140
Os.11943.1.S1_at--876--7271Chr08:28211568..28211592 (25 bp)
GGGACCTCAGTTGCAAAAGGTGTTA
LOC_Os08g45140
Os.11943.1.S1_at--135--5151Chr08:28211580..28211604 (25 bp)
GCAAAAGGTGTTAGAGCGGCTGACT
LOC_Os08g45140
Os.11943.1.S1_at--1038--3271Chr08:28211581..28211605 (25 bp)
CAAAAGGTGTTAGAGCGGCTGACTG
LOC_Os08g45140
Target Sequence 
GGATTCCTCCTTCGGCTCGCGGATGGAGGACTCTGTCAAGAGGACGCTCGCCGACAACCCCGTCGTCATCTACTCCAAGT
CCTGGTGCTCCTACTCCAGCCGCACGTCATCGAGCTCGACCAACTCGGCGCACAGGGACCTCAGTTGCAAAAGGTGTTAG
AGCGGCTGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis