Browse Element(s) Details


Os.49211.1.A1_at

Description gb:AK107465.1
DB_XREF= gi:32992674
TID=Os.49211.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A10, full insert sequence.
FL= gb:AK107465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4517011/11Carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45130Os.52522.1.S1_at11/118+28208162..28210257YDG/SRA domain containing protein, expressed
LOC_Os08g45140Os.11943.1.S1_s_at11/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.1.S1_at10/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45140Os.11943.2.S1_at1/118+28210464..28212700Glutaredoxin, putative, expressed
LOC_Os08g45150Os.54792.1.S1_at11/118+28213534..28215195GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g45160Os.24689.1.S1_at11/118+28214733..28218908TENA/THI-4 family protein, expressed
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49211.1.A1_at--86--8651Chr08:28223051..28223075 (25 bp)
TGGGAGGGCCACAGTACGACATGAC
LOC_Os08g45170
Os.49211.1.A1_at--634--1851Chr08:28223036..28223060 (25 bp)
ACGACATGACGCTCCTGGTGTGGAA
LOC_Os08g45170
Os.49211.1.A1_at--775--4791Chr08:28223026..28223050 (25 bp)
GCTCCTGGTGTGGAAGGACCCCAAG
LOC_Os08g45170
Os.49211.1.A1_at--1126--4371Chr08:28223006..28223030 (25 bp)
CCAAGCTCGGCAACTGGTGGCTCAG
LOC_Os08g45170
Os.49211.1.A1_at--420--2571Chr08:28222995..28223019 (25 bp)
AACTGGTGGCTCAGCTACGGCGACG
LOC_Os08g45170
Os.49211.1.A1_at--882--10651Chr08:28222791..28222815 (25 bp)
TTCCGCAACCTCGAGACGGTGGACG
LOC_Os08g45170
Os.49211.1.A1_at--245--9551Chr08:28222611..28222635 (25 bp)
TCTTGCCCCTAAGCGCTTATTAATT
LOC_Os08g45170
Os.49211.1.A1_at--860--9971Chr08:28222583..28222607 (25 bp)
TACCTCATCCAATATTCATCATCAC
LOC_Os08g45170
Os.49211.1.A1_at--597--3111Chr08:28222573..28222597 (25 bp)
AATATTCATCATCACGTCTCCATCT
LOC_Os08g45170
Os.49211.1.A1_at--495--7171Chr08:28222558..28222582 (25 bp)
GTCTCCATCTGTAATGTCGTCATGC
LOC_Os08g45170
Os.49211.1.A1_at--828--7111Chr08:28222540..28222564 (25 bp)
GTCATGCAATTCGATCCATATCCTC
LOC_Os08g45170
Target Sequence 
TGGGAGGGCCACAGTACGACATGACGCTCCTGGTGTGGAAGGACCCCAAGCTCGGCAACTGGTGGCTCAGCTACGGCGAC
GGCGCCGGCGGCCTCGTCGGCTACTGGCCCGCCGAGCTCTTCACCCACCTCTCCGACCACGCCACCATGGTCGAGTGGGG
CGGCGAGGTCGTCAACACCCACCCGCCCGGCTCCGCCCACACCGCCACGCAGATGGGCTCCGGCCACTTCGCCGCCGAGG
GCTTCGGCCGGGCCGCCTACTTCCGCAACCTCGAGACGGTGGACGCCGACAACAGCCTCGCCGCGGTACCCCTCGACGCC
ATCCAGACAATGGCGGAGGACGCCGGCTGCTACGACATCCGCAAGGCCTACGACGACGACGACGGCCGAGGCGGATGGGG
CGCACACTTCTACTACGGCGGCCCAGGCCACAATACGGCCTCTTGCCCCTAAGCGCTTATTAATTAATTACCTCATCCAA
TATTCATCATCACGTCTCCATCTGTAATGTCGTCATGCAATTCGATCCATATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49211.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis