Browse Element(s) Details


Os.49919.1.S1_at

Description gb:AK119354.1
DB_XREF= gi:37988977
TID=Os.49919.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F10, full insert sequence.
FL= gb:AK119354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4520011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49919.1.S1_at--186--7811Chr08:28246675..28246699 (25 bp)
GGTCGTGCCATTATCATCATTTTTG
LOC_Os08g45200
Os.49919.1.S1_at--393--5971Chr08:28246566..28246590 (25 bp)
GAGAACAGCACCGACTCAGTGCAGA
LOC_Os08g45200
Os.49919.1.S1_at--548--7191Chr08:28246491..28246515 (25 bp)
GTCGGAGCTTGCACTTGTAGCGATG
LOC_Os08g45200
Os.49919.1.S1_at--1113--8831Chr08:28246432..28246456 (25 bp)
TGATCAACTAGCCATTCACTCGGAG
LOC_Os08g45200
Os.49919.1.S1_at--442--9111Chr08:28246387..28246411 (25 bp)
TGCTGCACAACAAGTCACCATCGAA
LOC_Os08g45200
Os.49919.1.S1_at--248--2491Chr08:28246329..28246353 (25 bp)
AACAGCAGTTGCTCGTTGCAGGATC
LOC_Os08g45200
Os.49919.1.S1_at--766--2271Chr08:28246295..28246319 (25 bp)
AAATCGTGACTACTGAGTGCTGGTT
LOC_Os08g45200
Os.49919.1.S1_at--53--10231Chr08:28246264..28246288 (25 bp)
TTCGGCGCCCATGAGGGTTTTCCAA
LOC_Os08g45200
Os.49919.1.S1_at--569--7872Chr12:27464745..27465137 (25 bp)
GGTTTTCCAATCAGCACCTATGGTG
NONE
Os.49919.1.S1_at--538--811Chr08:28246230..28246254 (25 bp)
ATGGTGGTTCTATGGTTGTTTCTGT
LOC_Os08g45200
Os.49919.1.S1_at--469--7751Chr08:28246123..28246147 (25 bp)
GGTGTACACCACTATTATATGCATT
LOC_Os08g45200
Target Sequence 
GGTCGTGCCATTATCATCATTTTTGGAGCAGCAGCAGCACGAGGAGTGGGCTGCCGATGCTGCAAGGCACGCAATGCAAG
TGCTGATGATGGGGTCTCAGGCTGATGAGGAGAACAGCACCGACTCAGTGCAGAAAGACGAATTAGCAGCTGATGATGGT
GATGAGATGCAGCCGGATGCTTGGGTCGGAGCTTGCACTTGTAGCGATGGCAAGTCCAGCGATGAGTTCGTCAGCATTGA
GGATGATCAACTAGCCATTCACTCGGAGAATGAGGCCGGAGCTGCTGCTGCTGCACAACAAGTCACCATCGAAGAAGCAA
CAAGTGCACAGGCCAAGGAAGAGAAAAACAGCAGTTGCTCGTTGCAGGATCGATGACGGTAAATCGTGACTACTGAGTGC
TGGTTGGGAAATTCGGCGCCCATGAGGGTTTTCCAATCAGCACCTATGGTGGTTCTATGGTTGTTTCTGTAGTAGTGTAA
GCAACACTAAGATAGCAGTGAGCCAGAAATTAACTAAGCTAAGCACGTACGTACGTACGTCGGTACGTGTATGGTGTACA
CCACTATTATATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis