Browse Element(s) Details


Os.35508.1.S1_at

Description gb:AK061692.1
DB_XREF= gi:32971710
TID=Os.35508.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C04, full insert sequence.
FL= gb:AK067161.1 gb:AK061692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4524011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45249NANA8+28281083..28282271NA
LOC_Os08g45260Os.24831.3.S1_s_at11/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.1.S1_x_at10/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.3.S1_x_at7/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.53142.1.S1_at3/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.4.S1_x_at1/118+28298005..28300770retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35508.1.S1_at--489--8911Chr08:28274787..28274811 (25 bp)
TGAGCTTTTCAAACCCTACTGACCT
LOC_Os08g45240
Os.35508.1.S1_at--692--9691Chr08:28274779..28274803 (25 bp)
TCAAACCCTACTGACCTTGCTGGAG
LOC_Os08g45240
Os.35508.1.S1_at--963--5331Chr08:28274649..28274673 (25 bp)
GAAGTATGTTGGGAACCGCCCTATT
LOC_Os08g45240
Os.35508.1.S1_at--891--8611Chr08:28274640..28274664 (25 bp)
TGGGAACCGCCCTATTAAATTGCGT
LOC_Os08g45240
Os.35508.1.S1_at--28--971Chr08:28274597..28274621 (25 bp)
AGGACCGATGTTGATGCTCTAGAAA
LOC_Os08g45240
Os.35508.1.S1_at--1032--5371Chr08:28274488..28274510 (23 bp)
GAAGAATCACATCCAGAAGAAACCT
LOC_Os08g45240
Os.35508.1.S1_at--376--4551Chr08:28274458..28274482 (25 bp)
GCCCAAGAAAAGTATCCTTCACAAG
LOC_Os08g45240
Os.35508.1.S1_at--959--4871Chr08:28274429..28274453 (25 bp)
GCTATATTAGCCCTACTAAGCGCCA
LOC_Os08g45240
Os.35508.1.S1_at--1088--9771Chr08:28274417..28274437 (21 bp)
TAAGCGCCATCCATGTAAACATACT
LOC_Os08g45240
Os.35508.1.S1_at--1141--7571Chr08:28268495..28268519 (25 bp)
GGGCTCAAGAAAACTACTCTTACTG
LOC_Os08g45240
Os.35508.1.S1_at--433--2511Chr08:28268484..28268508 (25 bp)
AACTACTCTTACTGCAAAGGTTGTG
LOC_Os08g45240
Target Sequence 
TGAGCTTTTCAAACCCTACTGACCTTGCTGGAGCAATTAAAGAAATGAATGGGAAGTATGTTGGGAACCGCCCTATTAAA
TTGCGTAAAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGAATCACATCCAGAAGAAACCTAA
AATGCCCAAGAAAAGTATCCTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACATACTTTGTTGG
GTGATGGGGCTCAAGAAAACTACTCTTACTGCAAAGGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis