Browse Element(s) Details


Os.27448.1.S1_at

Description gb:CB675542
DB_XREF= gi:29679267
DB_XREF=OSJNEe11F16.r
CLONE=OSJNEe11F16
TID=Os.27448.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27448 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174872.1 (A.thaliana) polyprotein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4524011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45249NANA8+28281083..28282271NA
LOC_Os08g45260Os.24831.3.S1_s_at11/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.1.S1_x_at10/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.3.S1_x_at7/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.53142.1.S1_at3/118+28298005..28300770retrotransposon protein, putative, unclassified
LOC_Os08g45260Os.24831.4.S1_x_at1/118+28298005..28300770retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27448.1.S1_at--752--2111Chr08:28269535..28269559 (25 bp)
ACATGGGAAGATGCCGAGGCGTTCC
LOC_Os08g45240
Os.27448.1.S1_at--609--1231Chr08:28269504..28269528 (25 bp)
AGTTCCCTACCTTTCAGCTCGAGGA
LOC_Os08g45240
Os.27448.1.S1_at--932--3412Chr08:28274245..28274269 (25 bp)
CAGACATACACACGCCGCAGGAGGG
LOC_Os08g45240
Os.27448.1.S1_at--37--6452Chr08:28274141..28274165 (25 bp)
GATCACCGCGGCTGTAGATGGAAGT
LOC_Os08g45240
Os.27448.1.S1_at--614--6612Chr08:28274092..28274116 (25 bp)
GTTGTTTCCTAGTTTGTTGGCCAAT
LOC_Os08g45240
Os.27448.1.S1_at--725--7552Chr08:28274066..28274090 (25 bp)
GGGCCATATATTTCCCTGTACTTGG
LOC_Os08g45240
Os.27448.1.S1_at--828--9712Chr08:28274026..28274050 (25 bp)
TCAAGAATTACCACCTAATCTCTCC
LOC_Os08g45240
Os.27448.1.S1_at--86--12Chr08:28273996..28274020 (25 bp)
CTCACGTAAGCCACCGGTCTGAGGG
LOC_Os08g45240
Os.27448.1.S1_at--397--2951Chr08:28269093..28269117 (25 bp)
AAGGCGCTTGACATCTTTGCTGGTT
LOC_Os08g45240
Os.27448.1.S1_at--586--8811Chr08:28269023..28269047 (25 bp)
TGTTGAGTTTGTTATCTTGCACGAC
LOC_Os08g45240
Os.27448.1.S1_at--374--10431Chr08:28269012..28269036 (25 bp)
TTATCTTGCACGACATCTCATGGAG
LOC_Os08g45240
Target Sequence 
ACATGGGAAGATGCCGAGGCGTTCCACGAGCAGTTCCCTACCTTTCAGCTCGAGGACGAGCTGGGTCTCGAGGGGGGGAG
AGATGTCATGTGGGGCCAGACATACACACGCCGCAGGAGGGCGCGTGACATCCGCCGAGCGGCGGAGCGCGCAGCAGCAC
GCGAGGGAAACGCGCGCGACGCAGCTGCGCCCGCGCCCGCGATCACCGCGGCTGTAGATGGAAGTGGCTAGGAGAGATTT
TAGGAATAAGTTGTTTCCTAGTTTGTTGGCCAATTGGGCCATATATTTCCCTGTACTTGGANANNTGAGGATTAATCAAG
AATTACCACCTAATCTCTCCTCTACCTCACGTAAGCCACCGGTCTGAGGGGGATAACCTCGCGGTGAAGGACTGGAGCGC
GACTACGAGCTCCGTAGTCGCGGTCCGCCGTCGTTGGGCGTCAAGGCGCTTGACATCTTTGCTGGTTTGAGCATTGTATT
ATTGTTTGTCTTTAGCTTTATCATGTAACAAATGTTGAGTTTGTTATCTTGCACGACATCTCATGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis